| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-21 11:34 -0500 (Wed, 21 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4805 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4539 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 506/2343 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CytoML 2.23.0 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the CytoML package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CytoML.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CytoML |
| Version: 2.23.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoML |
| StartedAt: 2026-01-20 17:08:55 -0500 (Tue, 20 Jan 2026) |
| EndedAt: 2026-01-20 17:08:57 -0500 (Tue, 20 Jan 2026) |
| EllapsedTime: 2.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoML
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* checking for file ‘CytoML/DESCRIPTION’ ... OK
* preparing ‘CytoML’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
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Warning: SystemRequirements specified C++11: support has been removed
* installing *source* package ‘CytoML’ ...
** this is package ‘CytoML’ version ‘2.23.0’
** using staged installation
'config' variable 'CXX11' is defunct
'config' variable 'CXX11STD' is defunct
'config' variable 'CXX11FLAGS' is defunct
checking whether the C++ compiler works... no
configure: error: in `/tmp/RtmpdraaeU/Rbuild18eaa04e974af3/CytoML':
configure: error: C++ compiler cannot create executables
See `config.log' for more details
ERROR: configuration failed for package ‘CytoML’
* removing ‘/tmp/RtmpdraaeU/Rinst18eaa06a0e5dfd/CytoML’
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ERROR: package installation failed