Back to Build/check report for BioC 3.23:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-10-31 08:34 -0400 (Fri, 31 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 413/2321HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Cogito 1.17.0  (landing page)
Annika Bürger
Snapshot Date: 2025-10-30 13:40 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/Cogito
git_branch: devel
git_last_commit: 6bd2b9d
git_last_commit_date: 2025-10-29 11:13:02 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for Cogito on nebbiolo1

To the developers/maintainers of the Cogito package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Cogito.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Cogito
Version: 1.17.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Cogito
StartedAt: 2025-10-30 16:36:23 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 16:36:24 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Cogito
###
##############################################################################
##############################################################################


* checking for file ‘Cogito/DESCRIPTION’ ... OK
* preparing ‘Cogito’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
ERROR: dependency ‘TxDb.Mmusculus.UCSC.mm9.knownGene’ is not available for package ‘Cogito’
Perhaps try a variation of:
install.packages('TxDb.Mmusculus.UCSC.mm9.knownGene')
* removing ‘/tmp/Rtmp7ncEt5/Rinst107f7d27c784b5/Cogito’
      -----------------------------------
ERROR: package installation failed