| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-09-13 12:04 -0400 (Sat, 13 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4719 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4538 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4522 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4543 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 352/2327 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Chromatograms 0.99.3 (landing page) Philippine Louail
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | OK | ERROR | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | NA | NA | NA | ||||||||||
|
To the developers/maintainers of the Chromatograms package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Chromatograms.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Chromatograms |
| Version: 0.99.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Chromatograms.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Chromatograms_0.99.3.tar.gz |
| StartedAt: 2025-09-12 19:50:06 -0400 (Fri, 12 Sep 2025) |
| EndedAt: 2025-09-12 19:50:12 -0400 (Fri, 12 Sep 2025) |
| EllapsedTime: 6.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: Chromatograms.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Chromatograms.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Chromatograms_0.99.3.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/Chromatograms.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Chromatograms/DESCRIPTION’ ... OK
* this is package ‘Chromatograms’ version ‘0.99.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Chromatograms’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.22-bioc/meat/Chromatograms.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.22-bioc/meat/Chromatograms.Rcheck/00check.log’
for details.
Chromatograms.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Chromatograms ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘Chromatograms’ ... ** this is package ‘Chromatograms’ version ‘0.99.3’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called ‘IRanges’ Error: unable to load R code in package ‘Chromatograms’ Execution halted ERROR: lazy loading failed for package ‘Chromatograms’ * removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Chromatograms’