Back to Build/check report for BioC 3.23:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-10-23 11:30 -0400 (Thu, 23 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 3809
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 316/2355HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellScore 1.29.1  (landing page)
Nancy Mah
Snapshot Date: 2025-10-22 15:48 -0400 (Wed, 22 Oct 2025)
git_url: https://git.bioconductor.org/packages/CellScore
git_branch: devel
git_last_commit: ec8b968
git_last_commit_date: 2025-07-24 08:10:50 -0400 (Thu, 24 Jul 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for CellScore on nebbiolo1

To the developers/maintainers of the CellScore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellScore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CellScore
Version: 1.29.1
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CellScore
StartedAt: 2025-10-22 22:22:02 -0000 (Wed, 22 Oct 2025)
EndedAt: 2025-10-22 22:22:29 -0000 (Wed, 22 Oct 2025)
EllapsedTime: 27.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CellScore
###
##############################################################################
##############################################################################


* checking for file ‘CellScore/DESCRIPTION’ ... OK
* preparing ‘CellScore’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘CellScoreVignette.Rnw’ using knitr

Quitting from CellScoreVignette.Rnw:163-167 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'hgu133plus2CellScore'
---
Backtrace:
    x
 1. \-base::library(hgu133plus2CellScore)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CellScoreVignette.Rnw' failed with diagnostics:
there is no package called 'hgu133plus2CellScore'
--- failed re-building ‘CellScoreVignette.Rnw’

SUMMARY: processing the following file failed:
  ‘CellScoreVignette.Rnw’

Error: Vignette re-building failed.
Execution halted