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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 460/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COTAN 2.9.7  (landing page)
Galfrè Silvia Giulia
Snapshot Date: 2025-10-26 13:45 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/COTAN
git_branch: devel
git_last_commit: f624c05
git_last_commit_date: 2025-10-11 16:40:33 -0400 (Sat, 11 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for COTAN on kjohnson3

To the developers/maintainers of the COTAN package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COTAN.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: COTAN
Version: 2.9.7
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN
StartedAt: 2025-10-26 16:04:25 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 16:04:51 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 26.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN
###
##############################################################################
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* checking for file ‘COTAN/DESCRIPTION’ ... OK
* preparing ‘COTAN’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Guided_tutorial_v2.Rmd’ using rmarkdown

Quitting from Guided_tutorial_v2.Rmd:52-69 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection
---
Backtrace:
    ▆
 1. └─utils::read.csv(dataSetFile, sep = "\t", row.names = 1L)
 2.   └─utils::read.table(...)
 3.     └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Guided_tutorial_v2.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Guided_tutorial_v2.Rmd’

SUMMARY: processing the following file failed:
  ‘Guided_tutorial_v2.Rmd’

Error: Vignette re-building failed.
Execution halted