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This page was generated on 2025-08-30 12:08 -0400 (Sat, 30 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4615
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4562
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4541
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 358/2320HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CINdex 1.37.2  (landing page)
Yuriy Gusev
Snapshot Date: 2025-08-29 13:45 -0400 (Fri, 29 Aug 2025)
git_url: https://git.bioconductor.org/packages/CINdex
git_branch: devel
git_last_commit: c04e651
git_last_commit_date: 2025-07-24 18:24:54 -0400 (Thu, 24 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for CINdex on taishan

To the developers/maintainers of the CINdex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CINdex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: CINdex
Version: 1.37.2
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
StartedAt: 2025-08-28 22:50:43 -0000 (Thu, 28 Aug 2025)
EndedAt: 2025-08-28 22:54:17 -0000 (Thu, 28 Aug 2025)
EllapsedTime: 214.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
###
##############################################################################
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* checking for file ‘CINdex/DESCRIPTION’ ... OK
* preparing ‘CINdex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToDownloadCytobandInfo.Rmd’ using rmarkdown
--- finished re-building ‘HowToDownloadCytobandInfo.Rmd’

--- re-building ‘PrepareInputData.Rmd’ using rmarkdown

Quitting from PrepareInputData.Rmd:32-45 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'pd.genomewidesnp.6'
---
Backtrace:
    x
 1. \-base::library(pd.genomewidesnp.6)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PrepareInputData.Rmd' failed with diagnostics:
there is no package called 'pd.genomewidesnp.6'
--- failed re-building ‘PrepareInputData.Rmd’

--- re-building ‘CINdex.Rnw’ using knitr
--- finished re-building ‘CINdex.Rnw’

SUMMARY: processing the following file failed:
  ‘PrepareInputData.Rmd’

Error: Vignette re-building failed.
Execution halted