BUILD results for CGEN on kjohnson3
To the developers/maintainers of the CGEN package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CGEN.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
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raw results
Summary
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CGEN
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* checking for file ‘CGEN/DESCRIPTION’ ... OK
* preparing ‘CGEN’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘CGEN’ ...
** this is package ‘CGEN’ version ‘3.45.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Additive.c -o Additive.o
Additive.c:103:21: error: unknown type name 'vec'
static void vecinit(vec, n, c)
^
Additive.c:103:26: error: unknown type name 'n'
static void vecinit(vec, n, c)
^
Additive.c:103:29: error: unknown type name 'c'
static void vecinit(vec, n, c)
^
Additive.c:103:31: error: expected ';' after top level declarator
static void vecinit(vec, n, c)
^
;
Additive.c:107:1: error: expected identifier or '('
{
^
Additive.c:115:21: error: unknown type name 'invec'
static void vecmove(invec, n, outvec)
^
Additive.c:115:28: error: unknown type name 'n'
static void vecmove(invec, n, outvec)
^
Additive.c:115:31: error: unknown type name 'outvec'
static void vecmove(invec, n, outvec)
^
Additive.c:115:38: error: expected ';' after top level declarator
static void vecmove(invec, n, outvec)
^
;
Additive.c:119:1: error: expected identifier or '('
{
^
Additive.c:130:24: error: unknown type name 'invec'
static void vecMultCon(invec, n, c, ret)
^
Additive.c:130:31: error: unknown type name 'n'
static void vecMultCon(invec, n, c, ret)
^
Additive.c:130:34: error: unknown type name 'c'
static void vecMultCon(invec, n, c, ret)
^
Additive.c:130:37: error: unknown type name 'ret'
static void vecMultCon(invec, n, c, ret)
^
Additive.c:130:41: error: expected ';' after top level declarator
static void vecMultCon(invec, n, c, ret)
^
;
Additive.c:135:1: error: expected identifier or '('
{
^
Additive.c:144:26: error: unknown type name 'mat'
static void rMatMMultVec(mat, nrow, ncol, vec, ret)
^
Additive.c:144:31: error: unknown type name 'nrow'
static void rMatMMultVec(mat, nrow, ncol, vec, ret)
^
Additive.c:144:37: error: unknown type name 'ncol'
static void rMatMMultVec(mat, nrow, ncol, vec, ret)
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [Additive.o] Error 1
ERROR: compilation failed for package ‘CGEN’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmp7EmnVm/Rinst1280c7180683b/CGEN’
-----------------------------------
ERROR: package installation failed
