Jiefei Wang
| Snapshot Date: 2026-04-06 13:40 -0400 (Mon, 06 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/BiocParallel |
| git_branch: devel |
| git_last_commit: 6d29df0 |
| git_last_commit_date: 2025-10-29 10:12:50 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-07 11:36 -0400 (Tue, 07 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4630 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" | 4541 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2381 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocParallel 1.45.0 (landing page) Jiefei Wang
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for BiocParallel in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BiocParallel package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocParallel.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocParallel |
| Version: 1.45.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel |
| StartedAt: 2026-04-06 16:01:11 -0400 (Mon, 06 Apr 2026) |
| EndedAt: 2026-04-06 16:01:15 -0400 (Mon, 06 Apr 2026) |
| EllapsedTime: 4.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel
###
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* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* preparing ‘BiocParallel’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
-----------------------------------
Warning: SystemRequirements specified C++11: support has been removed
* installing *source* package ‘BiocParallel’ ...
** this is package ‘BiocParallel’ version ‘1.45.0’
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++ -arch arm64 -std=gnu++20 accepts -g... yes
checking for clang++ -arch arm64 -std=gnu++20 option to enable C++11 features... none needed
checking for library containing shm_open... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/mman.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
specified C++11
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"./" -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cpp11.cpp -o cpp11.o
In file included from cpp11.cpp:5:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include/cpp11/declarations.hpp:13:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include/cpp11.hpp:3:
/Library/Frameworks/R.framework/Versions/4.6/Resources/library/cpp11/include/cpp11/R.hpp:128:10: error: use of undeclared identifier 'R_getRegisteredNamespace'
128 | return R_getRegisteredNamespace(name);
| ^
1 error generated.
make: *** [cpp11.o] Error 1
ERROR: compilation failed for package ‘BiocParallel’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpQtJZi0/Rinst27b9445a7cd3/BiocParallel’
-----------------------------------
ERROR: package installation failed