Multiple platform build/check report for BioC 3.22 - CHECK results for BiocCheck on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4814
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4603
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4547
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4553
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for BiocCheck on taishan

To the developers/maintainers of the BiocCheck package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocCheck.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: BiocCheck

Version: 1.45.18

Command: /home/biocbuild/R/R/bin/R CMD check --install=check:BiocCheck.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings BiocCheck_1.45.18.tar.gz

StartedAt: 2025-09-19 05:44:02 -0000 (Fri, 19 Sep 2025)

EndedAt: 2025-09-19 06:35:54 -0000 (Fri, 19 Sep 2025)

EllapsedTime: 3111.8 seconds

RetCode: None

Status: TIMEOUT

CheckDir: BiocCheck.Rcheck

Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:BiocCheck.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings BiocCheck_1.45.18.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/BiocCheck.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocCheck/DESCRIPTION’ ... OK
* this is package ‘BiocCheck’ version ‘1.45.18’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocCheck’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘tools:::.build_news_db_from_package_NEWS_Rd’
  ‘tools:::.build_news_db_from_package_NEWS_md’
  ‘tools:::.news_reader_default’ ‘tools:::analyze_licenses’
  ‘tools:::str_parse_logic’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘BiocCheckRun’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
BiocCheck 22.191  4.404  57.624
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘tinytest.R’

Installation output

BiocCheck.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL BiocCheck
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘BiocCheck’ ...
** this is package ‘BiocCheck’ version ‘1.45.18’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocCheck)

Tests output

BiocCheck.Rcheck/tests/tinytest.Rout


R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> if (requireNamespace("tinytest", quietly = TRUE))
+     tinytest::test_package("BiocCheck")
 You are using 'tinytest::' to express test expectations.
 The results from these tests are not collected. Found the following occurrences:
 > test_BiocCheck.R#181: tinytest::expect_match
 > test_BiocCheck.R#684: tinytest::expect_match
 > test_BiocCheck.R#715: tinytest::expect_match 
 Remove the 'tinytest::' prefix to register the test results.FALSE

test_BiocCheck.R..............    0 tests    Loading required package: usethis

test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    ✖ ERROR: Invalid package Version, see
https://contributions.bioconductor.org/versionnum.html

test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    ✖ ERROR: Invalid package Version, see
https://contributions.bioconductor.org/versionnum.html

test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    0 tests    ! WARNING: y of x.y.z version should be even in release

test_BiocCheck.R..............    0 tests    
test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    1 tests [0;32mOK[0m ! WARNING: New package x version starting with non-zero value (e.g., 1.y.z,
2.y.z); got '1.99.3'.

test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    1 tests [0;32mOK[0m 
test_BiocCheck.R..............    2 tests [0;32mOK[0m 
test_BiocCheck.R..............    2 tests [0;32mOK[0m ✖ ERROR: New package 'y' version not 99 (i.e., x.99.z); Package version: 0.2.3

test_BiocCheck.R..............    2 tests [0;32mOK[0m 
test_BiocCheck.R..............    2 tests [0;32mOK[0m 
test_BiocCheck.R..............    2 tests [0;32mOK[0m 
test_BiocCheck.R..............    2 tests [0;32mOK[0m 
test_BiocCheck.R..............    3 tests [0;32mOK[0m 
test_BiocCheck.R..............    3 tests [0;32mOK[0m 
test_BiocCheck.R..............    3 tests [0;32mOK[0m 
test_BiocCheck.R..............    3 tests [0;32mOK[0m 
test_BiocCheck.R..............    4 tests [0;32mOK[0m 
test_BiocCheck.R..............    4 tests [0;32mOK[0m 
test_BiocCheck.R..............    4 tests [0;32mOK[0m 
test_BiocCheck.R..............    4 tests [0;32mOK[0m 
test_BiocCheck.R..............    4 tests [0;32mOK[0m ✖ ERROR: Remove 'file14026b258966f3.BiocCheck' from the package directory

test_BiocCheck.R..............    4 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    5 tests [0;32mOK[0m 
test_BiocCheck.R..............    6 tests [0;32mOK[0m 
test_BiocCheck.R..............    6 tests [0;32mOK[0m ✖ ERROR: Remove 'inst/doc' folder from the package source

test_BiocCheck.R..............    6 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m * Checking that biocViews are present...
✖ ERROR: No biocViews terms found.

test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    7 tests [0;32mOK[0m * Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
! WARNING: Invalid BiocViews term(s):
• 'foo'
• ...
• 'baz': Did you mean 'ag'?
* Checking for recommended biocViews...
No man pages found.
No vignettes found.

test_BiocCheck.R..............    7 tests [0;32mOK[0m 
test_BiocCheck.R..............    8 tests [0;32mOK[0m 
test_BiocCheck.R..............    8 tests [0;32mOK[0m 
test_BiocCheck.R..............    8 tests [0;32mOK[0m * Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No man pages found.
No vignettes found.

test_BiocCheck.R..............    8 tests [0;32mOK[0m 
test_BiocCheck.R..............    9 tests [0;32mOK[0m 
test_BiocCheck.R..............    9 tests [0;32mOK[0m 
test_BiocCheck.R..............    9 tests [0;32mOK[0m * Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
! WARNING: Use biocViews from one category only (one of Software,
ExperimentData, AnnotationData, Workflow)

test_BiocCheck.R..............    9 tests [0;32mOK[0m 
test_BiocCheck.R..............   10 tests [0;32mOK[0m 
test_BiocCheck.R..............   10 tests [0;32mOK[0m 
test_BiocCheck.R..............   10 tests [0;32mOK[0m 
test_BiocCheck.R..............   10 tests [0;32mOK[0m 
test_BiocCheck.R..............   10 tests [0;32mOK[0m ✖ ERROR: System files found that should not be Git tracked.
• something.Rproj

test_BiocCheck.R..............   10 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   11 tests [0;32mOK[0m 
test_BiocCheck.R..............   12 tests [0;32mOK[0m 
test_BiocCheck.R..............   13 tests [0;32mOK[0m 
test_BiocCheck.R..............   13 tests [0;32mOK[0m * Checking License: for restrictive use...
ℹ NOTE: License 'GPL-3.0' unknown; refer to $R_HOME/share/licenses/license.db
ℹ and https://choosealicense.com/appendix/ for more info.

test_BiocCheck.R..............   13 tests [0;32mOK[0m 
test_BiocCheck.R..............   13 tests [0;32mOK[0m 
test_BiocCheck.R..............   13 tests [0;32mOK[0m * Checking License: for restrictive use...

test_BiocCheck.R..............   13 tests [0;32mOK[0m 
test_BiocCheck.R..............   13 tests [0;32mOK[0m 
test_BiocCheck.R..............   13 tests [0;32mOK[0m * Checking License: for restrictive use...
✖ ERROR: License 'CC BY-NC-ND 4.0' restricts use

test_BiocCheck.R..............   13 tests [0;32mOK[0m 
test_BiocCheck.R..............   14 tests [0;32mOK[0m 
test_BiocCheck.R..............   14 tests [0;32mOK[0m * Checking License: for restrictive use...
✖ ERROR: License 'CC BY-NC-ND 4.0 + file LICENSE' restricts use

test_BiocCheck.R..............   14 tests [0;32mOK[0m 
test_BiocCheck.R..............   15 tests [0;32mOK[0m 
test_BiocCheck.R..............   15 tests [0;32mOK[0m * Checking License: for restrictive use...
ℹ NOTE: License 'UNKNOWN' unknown; refer to $R_HOME/share/licenses/license.db
ℹ and https://choosealicense.com/appendix/ for more info.

test_BiocCheck.R..............   15 tests [0;32mOK[0m 
test_BiocCheck.R..............   16 tests [0;32mOK[0m 
test_BiocCheck.R..............   16 tests [0;32mOK[0m * Checking License: for restrictive use...
ℹ NOTE: malformed 'License:' field 'NA'

test_BiocCheck.R..............   16 tests [0;32mOK[0m 
test_BiocCheck.R..............   17 tests [0;32mOK[0m 
test_BiocCheck.R..............   17 tests [0;32mOK[0m 
test_BiocCheck.R..............   17 tests [0;32mOK[0m 
test_BiocCheck.R..............   17 tests [0;32mOK[0m 
test_BiocCheck.R..............   18 tests [0;32mOK[0m * Checking License: for restrictive use...
ℹ NOTE: License 'GPL-3.0' unknown; refer to $R_HOME/share/licenses/license.db
ℹ and https://choosealicense.com/appendix/ for more info.

test_BiocCheck.R..............   18 tests [0;32mOK[0m 
test_BiocCheck.R..............   19 tests [0;32mOK[0m 
test_BiocCheck.R..............   19 tests [0;32mOK[0m 
test_BiocCheck.R..............   19 tests [0;32mOK[0m 
test_BiocCheck.R..............   20 tests [0;32mOK[0m * Checking License: for restrictive use...

test_BiocCheck.R..............   20 tests [0;32mOK[0m 
test_BiocCheck.R..............   21 tests [0;32mOK[0m 
test_BiocCheck.R..............   21 tests [0;32mOK[0m 
test_BiocCheck.R..............   21 tests [0;32mOK[0m 
test_BiocCheck.R..............   21 tests [0;32mOK[0m 
test_BiocCheck.R..............   21 tests [0;32mOK[0m 
test_BiocCheck.R..............   21 tests [0;32mOK[0m 
test_BiocCheck.R..............   21 tests [0;32mOK[0m ! WARNING: Package files exceed the 5MB size limit.
Files over the limit:
• fileA.rda
• fileB.rds

test_BiocCheck.R..............   21 tests [0;32mOK[0m 
test_BiocCheck.R..............   22 tests [0;32mOK[0m 
test_BiocCheck.R..............   22 tests [0;32mOK[0m ! WARNING: Data files exceed the 5MB size limit.
Use 'ExperimentHub' or 'AnnotationHub' for the files:
• fileA.rda
• fileB.rds

test_BiocCheck.R..............   22 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
✖ ERROR: Remove whitespace from DESCRIPTION field names.

test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   23 tests [0;32mOK[0m 
test_BiocCheck.R..............   24 tests [0;32mOK[0m 
test_BiocCheck.R..............   24 tests [0;32mOK[0m ! WARNING: Description field in the DESCRIPTION file is too concise

test_BiocCheck.R..............   24 tests [0;32mOK[0m 
test_BiocCheck.R..............   24 tests [0;32mOK[0m 
test_BiocCheck.R..............   24 tests [0;32mOK[0m ℹ NOTE: The Description field in the DESCRIPTION is made up of less than 3
sentences. Provide a more detailed description of the package.

test_BiocCheck.R..............   24 tests [0;32mOK[0m 
test_BiocCheck.R..............   24 tests [0;32mOK[0m 
test_BiocCheck.R..............   24 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
✖ ERROR: Package directory 'file14026b2f259760' must match Package: field (got
'Foo').

test_BiocCheck.R..............   24 tests [0;32mOK[0m 
test_BiocCheck.R..............   24 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
✖ ERROR: Authors@R field must be valid 'person' object.

test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
✖ ERROR: No Authors@R maintainer [cre] field in DESCRIPTION.

test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
✖ ERROR: No Authors@R [cre] or Maintainer field in DESCRIPTION file.

test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   25 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
✖ ERROR: No email address for Authors@R maintainer [cre] field.

test_BiocCheck.R..............   25 tests [0;32mOK[0m 
test_BiocCheck.R..............   26 tests [0;32mOK[0m 
test_BiocCheck.R..............   26 tests [0;32mOK[0m 
test_BiocCheck.R..............   26 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
✖ ERROR: Use Authors@R field not Author/Maintainer fields. Do not use both.
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'

test_BiocCheck.R..............   26 tests [0;32mOK[0m 
test_BiocCheck.R..............   27 tests [0;32mOK[0m 
test_BiocCheck.R..............   28 tests [0;32mOK[0m 
test_BiocCheck.R..............   28 tests [0;32mOK[0m 
test_BiocCheck.R..............   28 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
✖ ERROR: Use Authors@R field not Author/Maintainer fields. Do not use both.
ℹ NOTE: Invalid ORCID iD for Bioconductor Package Maintainer

test_BiocCheck.R..............   28 tests [0;32mOK[0m 
test_BiocCheck.R..............   29 tests [0;32mOK[0m 
test_BiocCheck.R..............   29 tests [0;32mOK[0m 
test_BiocCheck.R..............   29 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
✖ ERROR: Do not use Author/Maintainer fields. Use Authors@R.
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.

test_BiocCheck.R..............   29 tests [0;32mOK[0m 
test_BiocCheck.R..............   30 tests [0;32mOK[0m 
test_BiocCheck.R..............   31 tests [0;32mOK[0m 
test_BiocCheck.R..............   31 tests [0;32mOK[0m 
test_BiocCheck.R..............   31 tests [0;32mOK[0m * Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
✖ ERROR: Use Authors@R field not Author/Maintainer fields. Do not use both.
✖ ERROR: Designate only one maintainer with Authors@R [cre].
ℹ NOTE: Invalid ORCID iD for Bioconductor Package Maintainer

test_BiocCheck.R..............   31 tests [0;32mOK[0m 
test_BiocCheck.R..............   32 tests [0;32mOK[0m 
test_BiocCheck.R..............   32 tests [0;32mOK[0m 
test_BiocCheck.R..............   32 tests [0;32mOK[0m * Checking that provided CITATION file is correctly formatted...
! WARNING: The 'doi' argument is missing or empty in the CITATION's
'bibentry()'. Only include a CITATION file if there is a preprint or
publication associated with this Bioconductor package.

test_BiocCheck.R..............   32 tests [0;32mOK[0m 
test_BiocCheck.R..............   33 tests [0;32mOK[0m 
test_BiocCheck.R..............   33 tests [0;32mOK[0m 
test_BiocCheck.R..............   33 tests [0;32mOK[0m * Checking that provided CITATION file is correctly formatted...
! WARNING: Unable to read CITATION file with 'utils::readCitationFile()'

test_BiocCheck.R..............   33 tests [0;32mOK[0m 
test_BiocCheck.R..............   34 tests [0;32mOK[0m 
test_BiocCheck.R..............   34 tests [0;32mOK[0m 
test_BiocCheck.R..............   34 tests [0;32mOK[0m ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html

test_BiocCheck.R..............   34 tests [0;32mOK[0m 
test_BiocCheck.R..............   35 tests [0;32mOK[0m 
test_BiocCheck.R..............   35 tests [0;32mOK[0m 
test_BiocCheck.R..............   35 tests [0;32mOK[0m 
test_BiocCheck.R..............   35 tests [0;32mOK[0m 
test_BiocCheck.R..............   36 tests [0;32mOK[0m 
test_BiocCheck.R..............   36 tests [0;32mOK[0m ℹ NOTE: skip_on_bioc() found in testthat files: a_test.R

test_BiocCheck.R..............   36 tests [0;32mOK[0m 
test_BiocCheck.R..............   37 tests [0;32mOK[0m 
test_BiocCheck.R..............   37 tests [0;32mOK[0m 
test_BiocCheck.R..............   37 tests [0;32mOK[0m 
test_BiocCheck.R..............   37 tests [0;32mOK[0m 
test_BiocCheck.R..............   38 tests [0;32mOK[0m 
test_BiocCheck.R..............   38 tests [0;32mOK[0m 
test_BiocCheck.R..............   39 tests [0;32mOK[0m 
test_BiocCheck.R..............   39 tests [0;32mOK[0m 
test_BiocCheck.R..............   40 tests [0;32mOK[0m 
test_BiocCheck.R..............   40 tests [0;32mOK[0m 
test_BiocCheck.R..............   41 tests [0;32mOK[0m 
test_BiocCheck.R..............   41 tests [0;32mOK[0m 
test_BiocCheck.R..............   41 tests [0;32mOK[0m 
test_BiocCheck.R..............   41 tests [0;32mOK[0m 
test_BiocCheck.R..............   42 tests [0;32mOK[0m 
test_BiocCheck.R..............   42 tests [0;32mOK[0m 
test_BiocCheck.R..............   42 tests [0;32mOK[0m 
test_BiocCheck.R..............   43 tests [0;32mOK[0m 
test_BiocCheck.R..............   43 tests [0;32mOK[0m 
test_BiocCheck.R..............   43 tests [0;32mOK[0m 
test_BiocCheck.R..............   44 tests [0;32mOK[0m 
test_BiocCheck.R..............   44 tests [0;32mOK[0m 
test_BiocCheck.R..............   44 tests [0;32mOK[0m 
test_BiocCheck.R..............   44 tests [0;32mOK[0m 
test_BiocCheck.R..............   45 tests [0;32mOK[0m 
test_BiocCheck.R..............   45 tests [0;32mOK[0m 
test_BiocCheck.R..............   45 tests [0;32mOK[0m 
test_BiocCheck.R..............   45 tests [0;32mOK[0m 
test_BiocCheck.R..............   46 tests [0;32mOK[0m 
test_BiocCheck.R..............   47 tests [0;32mOK[0m 
test_BiocCheck.R..............   47 tests [0;32mOK[0m 
test_BiocCheck.R..............   48 tests [0;32mOK[0m 
test_BiocCheck.R..............   48 tests [0;32mOK[0m 
test_BiocCheck.R..............   48 tests [0;32mOK[0m 
test_BiocCheck.R..............   48 tests [0;32mOK[0m ── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/home/biocbuild/tmp/RtmpINpuyn/file14026b6c70acc9/file14026b2ac6539a/DESCRIPTION’ ... OK
* preparing ‘file14026b2ac6539a’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Removed empty directory ‘file14026b2ac6539a/R’
* building ‘file14026b2ac6539a_0.99.0.tar.gz’


test_BiocCheck.R..............   48 tests [0;32mOK[0m 
test_BiocCheck.R..............   48 tests [0;32mOK[0m 
test_BiocCheck.R..............   48 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m ✖ ERROR: Use 'BiocParallel' instead of 'multicore'. 'multicore' is deprecated
and does not work on Windows.

test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   49 tests [0;32mOK[0m 
test_BiocCheck.R..............   50 tests [0;32mOK[0m 
test_BiocCheck.R..............   50 tests [0;32mOK[0m 
test_BiocCheck.R..............   50 tests [0;32mOK[0m 
test_BiocCheck.R..............   51 tests [0;32mOK[0m 
test_BiocCheck.R..............   51 tests [0;32mOK[0m 
test_BiocCheck.R..............   51 tests [0;32mOK[0m 
test_BiocCheck.R..............   51 tests [0;32mOK[0m 
test_BiocCheck.R..............   51 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   52 tests [0;32mOK[0m 
test_BiocCheck.R..............   53 tests [0;32mOK[0m 
test_BiocCheck.R..............   53 tests [0;32mOK[0m 
test_BiocCheck.R..............   53 tests [0;32mOK[0m 
test_BiocCheck.R..............   53 tests [0;32mOK[0m 
test_BiocCheck.R..............   54 tests [0;32mOK[0m 
test_BiocCheck.R..............   54 tests [0;32mOK[0m 
test_BiocCheck.R..............   54 tests [0;32mOK[0m 
test_BiocCheck.R..............   54 tests [0;32mOK[0m 
test_BiocCheck.R..............   55 tests [0;32mOK[0m 
test_BiocCheck.R..............   55 tests [0;32mOK[0m 
test_BiocCheck.R..............   55 tests [0;32mOK[0m

Example timings

BiocCheck.Rcheck/BiocCheck-Ex.timings

name	user	system	elapsed
BiocCheck-class	0.001	0.000	0.001
BiocCheck	22.191	4.404	57.624
BiocCheckGitClone	0.826	0.040	0.869
BiocPackage-class	0	0	0