Multiple platform build/check report for BioC 3.22 - BUILD results for BUSpaRse on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4719
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4538
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4522
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4543
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BUSpaRse on kjohnson3

To the developers/maintainers of the BUSpaRse package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUSpaRse.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BUSpaRse

Version: 1.23.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse

StartedAt: 2025-09-12 15:47:08 -0400 (Fri, 12 Sep 2025)

EndedAt: 2025-09-12 15:48:06 -0400 (Fri, 12 Sep 2025)

EllapsedTime: 57.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse
###
##############################################################################
##############################################################################


* checking for file ‘BUSpaRse/DESCRIPTION’ ... OK
* preparing ‘BUSpaRse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘sparse-matrix.Rmd’ using rmarkdown

Quitting from sparse-matrix.Rmd:42-46 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `my_useMart()`:
! Version 99 is unavailable in the archive.
---
Backtrace:
    ▆
 1. └─BUSpaRse::transcript2gene(...)
 2.   └─base::mapply(...)
 3.     └─BUSpaRse (local) `<fn>`(...)
 4.       └─BUSpaRse:::my_useMart(ensembl_version, mart_use, ds_name, host_use)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sparse-matrix.Rmd' failed with diagnostics:
Version 99 is unavailable in the archive.
--- failed re-building ‘sparse-matrix.Rmd’

--- re-building ‘tr2g.Rmd’ using rmarkdown

Quitting from tr2g.Rmd:64-69 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `my_useMart()`:
! Version 99 is unavailable in the archive.
---
Backtrace:
    ▆
 1. └─BUSpaRse::tr2g_ensembl(...)
 2.   └─BUSpaRse:::my_useMart(ensembl_version, mart_use, ds_name, host_use)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tr2g.Rmd' failed with diagnostics:
Version 99 is unavailable in the archive.
--- failed re-building ‘tr2g.Rmd’

SUMMARY: processing the following files failed:
  ‘sparse-matrix.Rmd’ ‘tr2g.Rmd’

Error: Vignette re-building failed.
Execution halted