| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-06 11:34 -0500 (Tue, 06 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 164/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BEclear 2.27.1 (landing page) Livia Rasp
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the BEclear package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BEclear.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BEclear |
| Version: 2.27.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BEclear |
| StartedAt: 2026-01-05 16:22:36 -0500 (Mon, 05 Jan 2026) |
| EndedAt: 2026-01-05 16:22:53 -0500 (Mon, 05 Jan 2026) |
| EllapsedTime: 17.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BEclear
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* checking for file ‘BEclear/DESCRIPTION’ ... OK
* preparing ‘BEclear’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to process help pages)
Loading required namespace: BEclear
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘BEclear.Rmd’ using rmarkdown
Quitting from BEclear.Rmd:132-139 [detection]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `log_info()`:
! could not find function "log_info"
---
Backtrace:
▆
1. └─BEclear::calcBatchEffects(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BEclear.Rmd' failed with diagnostics:
could not find function "log_info"
--- failed re-building ‘BEclear.Rmd’
SUMMARY: processing the following file failed:
‘BEclear.Rmd’
Error: Vignette re-building failed.
Execution halted