Package: KEGGdzPathwaysGEO

Version: 1.22.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.22.0.tar.gz

StartedAt: 2019-10-17 13:23:38 -0400 (Thu, 17 Oct 2019)

EndedAt: 2019-10-17 13:28:52 -0400 (Thu, 17 Oct 2019)

EllapsedTime: 314.3 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.22.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.8Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL KEGGdzPathwaysGEO
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.059	0.003	0.063
GSE14762	0.145	0.000	0.146
GSE15471	0.325	0.016	0.341
GSE16515	0.169	0.003	0.174
GSE18842	0.373	0.017	0.389
GSE19188	0.645	0.036	0.680
GSE19728	0.120	0.008	0.127
GSE20153	0.107	0.004	0.110
GSE20291	0.069	0.004	0.072
GSE21354	0.116	0.000	0.115
GSE3467	0.120	0.000	0.121
GSE3585	0.042	0.000	0.043
GSE3678	0.095	0.007	0.104
GSE4107	0.124	0.008	0.132
GSE5281_EC	0.137	0.004	0.140
GSE5281_HIP	0.174	0.000	0.175
GSE5281_VCX	0.194	0.000	0.194
GSE6956AA	0.04	0.00	0.04
GSE6956C	0.088	0.003	0.091
GSE781	0.052	0.000	0.052
GSE8671	0.300	0.000	0.301
GSE8762	0.115	0.016	0.131
GSE9348	0.310	0.019	0.329
GSE9476	0.114	0.001	0.113
KEGGdzPathwaysGEO-package	0.313	0.015	0.341