Michael Zon
| Snapshot Date: 2019-10-17 09:00:12 -0400 (Thu, 17 Oct 2019) |
| URL: https://git.bioconductor.org/packages/MetaGxPancreas |
| Branch: RELEASE_3_9 |
| Last Commit: 897273a |
| Last Changed Date: 2019-05-02 11:56:51 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 experimental data |
This page was generated on 2019-10-17 16:51:37 -0400 (Thu, 17 Oct 2019).
| Package 214/371 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MetaGxPancreas 1.4.0 Michael Zon
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: MetaGxPancreas |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MetaGxPancreas.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MetaGxPancreas_1.4.0.tar.gz |
| StartedAt: 2019-10-17 13:27:28 -0400 (Thu, 17 Oct 2019) |
| EndedAt: 2019-10-17 13:41:17 -0400 (Thu, 17 Oct 2019) |
| EllapsedTime: 829.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MetaGxPancreas.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MetaGxPancreas.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MetaGxPancreas_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/MetaGxPancreas.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MetaGxPancreas/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MetaGxPancreas’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MetaGxPancreas’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
BADEA 34.123 0.628 41.265
OUH 28.973 0.369 31.432
KIRBY 29.017 0.300 31.584
BAUER 28.790 0.324 31.444
ICGCSEQ 28.751 0.304 31.230
WINTER 28.755 0.272 31.083
HAIDER 28.716 0.276 31.193
PEI 28.364 0.316 30.697
TCGA 28.383 0.284 30.844
BALAGURUNATH 28.162 0.420 30.928
COLLISON 28.217 0.288 30.526
LUNARDI 28.077 0.400 30.458
HAMIDI 28.163 0.264 30.498
ZHANG 27.961 0.420 30.552
loadPancreasDatasets 27.975 0.376 31.225
JANKY 27.841 0.360 31.028
loadPancreasEsets 27.800 0.320 30.316
YANG 27.614 0.320 30.105
GRUTZMANN 27.559 0.291 30.311
ICGCMICRO 27.342 0.288 29.694
UNC 27.270 0.351 29.759
PCSI 26.969 0.351 29.353
CHEN 25.916 0.300 28.618
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘required.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MetaGxPancreas.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL MetaGxPancreas ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘MetaGxPancreas’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MetaGxPancreas)
MetaGxPancreas.Rcheck/tests/required.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # > > proc.time() user system elapsed 0.175 0.013 0.174
MetaGxPancreas.Rcheck/MetaGxPancreas-Ex.timings
| name | user | system | elapsed | |
| BADEA | 34.123 | 0.628 | 41.265 | |
| BALAGURUNATH | 28.162 | 0.420 | 30.928 | |
| BAUER | 28.790 | 0.324 | 31.444 | |
| CHEN | 25.916 | 0.300 | 28.618 | |
| COLLISON | 28.217 | 0.288 | 30.526 | |
| GRUTZMANN | 27.559 | 0.291 | 30.311 | |
| HAIDER | 28.716 | 0.276 | 31.193 | |
| HAMIDI | 28.163 | 0.264 | 30.498 | |
| ICGCMICRO | 27.342 | 0.288 | 29.694 | |
| ICGCSEQ | 28.751 | 0.304 | 31.230 | |
| JANKY | 27.841 | 0.360 | 31.028 | |
| KIRBY | 29.017 | 0.300 | 31.584 | |
| LUNARDI | 28.077 | 0.400 | 30.458 | |
| OUH | 28.973 | 0.369 | 31.432 | |
| PCSI | 26.969 | 0.351 | 29.353 | |
| PEI | 28.364 | 0.316 | 30.697 | |
| TCGA | 28.383 | 0.284 | 30.844 | |
| UNC | 27.270 | 0.351 | 29.759 | |
| WINTER | 28.755 | 0.272 | 31.083 | |
| YANG | 27.614 | 0.320 | 30.105 | |
| ZHANG | 27.961 | 0.420 | 30.552 | |
| loadPancreasDatasets | 27.975 | 0.376 | 31.225 | |
| loadPancreasEsets | 27.800 | 0.320 | 30.316 | |