Miguel Julia
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/sincell |
| Branch: RELEASE_3_9 |
| Last Commit: 4756564 |
| Last Changed Date: 2019-10-07 05:06:38 -0400 (Mon, 07 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:23 -0400 (Wed, 16 Oct 2019).
| Package 1530/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sincell 1.16.1 Miguel Julia
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sincell |
| Version: 1.16.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sincell_1.16.1.tar.gz && rm -rf sincell.buildbin-libdir && mkdir sincell.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sincell.buildbin-libdir sincell_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sincell_1.16.1.zip && rm sincell_1.16.1.tar.gz sincell_1.16.1.zip |
| StartedAt: 2019-10-15 19:05:58 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:07:27 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 89.7 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sincell_1.16.1.tar.gz && rm -rf sincell.buildbin-libdir && mkdir sincell.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sincell.buildbin-libdir sincell_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sincell_1.16.1.zip && rm sincell_1.16.1.tar.gz sincell_1.16.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 542k 100 542k 0 0 7650k 0 --:--:-- --:--:-- --:--:-- 8480k
install for i386
* installing *source* package 'sincell' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pseudoreplicatesbymodel.cpp -o pseudoreplicatesbymodel.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pseudoreplicatesbynoise.cpp -o pseudoreplicatesbynoise.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pseudoreplicatesbynoise_cv2.cpp -o pseudoreplicatesbynoise_cv2.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c sstalgorithm.cpp -o sstalgorithm.o
sstalgorithm.cpp: In function 'Rcpp::NumericVector sstalgorithm(Rcpp::NumericVector, int, Rcpp::NumericMatrix)':
sstalgorithm.cpp:28:17: warning: 'disty' may be used uninitialized in this function [-Wmaybe-uninitialized]
out[2] = disty;
^
sstalgorithm.cpp:27:17: warning: 'distx' may be used uninitialized in this function [-Wmaybe-uninitialized]
out[1] = distx;
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o sincell.dll tmp.def RcppExports.o pseudoreplicatesbymodel.o pseudoreplicatesbynoise.o pseudoreplicatesbynoise_cv2.o sstalgorithm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sincell.buildbin-libdir/00LOCK-sincell/00new/sincell/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sincell'
finding HTML links ... done
ExpressionMatrix html
f_distance2vector html
geneset.list html
knnalgorithm html
pseudoreplicatesbymodel html
pseudoreplicatesbynoise html
pseudoreplicatesbynoise_cv2 html
sc_AssociationOfCellsHierarchyWithAGeneSet
html
sc_ComparissonOfGraphs html
sc_DimensionalityReductionObj html
sc_GraphBuilderObj html
sc_InSilicoCellsReplicatesObj html
sc_InitializingSincellObject html
sc_StatisticalSupportByGeneSubsampling
html
sc_StatisticalSupportByReplacementWithInSilicoCellsReplicates
html
sc_clusterObj html
sc_distanceObj html
sc_marker2color html
sstalgorithm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sincell' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pseudoreplicatesbymodel.cpp -o pseudoreplicatesbymodel.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pseudoreplicatesbynoise.cpp -o pseudoreplicatesbynoise.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pseudoreplicatesbynoise_cv2.cpp -o pseudoreplicatesbynoise_cv2.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c sstalgorithm.cpp -o sstalgorithm.o
sstalgorithm.cpp: In function 'Rcpp::NumericVector sstalgorithm(Rcpp::NumericVector, int, Rcpp::NumericMatrix)':
sstalgorithm.cpp:28:17: warning: 'disty' may be used uninitialized in this function [-Wmaybe-uninitialized]
out[2] = disty;
^
sstalgorithm.cpp:27:17: warning: 'distx' may be used uninitialized in this function [-Wmaybe-uninitialized]
out[1] = distx;
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o sincell.dll tmp.def RcppExports.o pseudoreplicatesbymodel.o pseudoreplicatesbynoise.o pseudoreplicatesbynoise_cv2.o sstalgorithm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sincell.buildbin-libdir/sincell/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sincell' as sincell_1.16.1.zip
* DONE (sincell)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sincell' successfully unpacked and MD5 sums checked