Joseph R Boyd
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/seqsetvis |
| Branch: RELEASE_3_9 |
| Last Commit: f119914 |
| Last Changed Date: 2019-09-11 10:11:11 -0400 (Wed, 11 Sep 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:41:01 -0400 (Wed, 16 Oct 2019).
| Package 1499/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| seqsetvis 1.4.1 Joseph R Boyd
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: seqsetvis |
| Version: 1.4.1 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:seqsetvis.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings seqsetvis_1.4.1.tar.gz |
| StartedAt: 2019-10-16 07:02:50 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 07:12:22 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 572.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: seqsetvis.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:seqsetvis.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings seqsetvis_1.4.1.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/seqsetvis.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seqsetvis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seqsetvis' version '1.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seqsetvis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ssvSignalBandedQuantiles 7.07 0.26 7.22
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ssvSignalBandedQuantiles 7.71 0.09 7.74
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
seqsetvis.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/seqsetvis_1.4.1.tar.gz && rm -rf seqsetvis.buildbin-libdir && mkdir seqsetvis.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqsetvis.buildbin-libdir seqsetvis_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL seqsetvis_1.4.1.zip && rm seqsetvis_1.4.1.tar.gz seqsetvis_1.4.1.zip
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install for i386
* installing *source* package 'seqsetvis' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'seqsetvis'
finding HTML links ... done
Bcell_peaks html
CTCF_in_10a_bigWig_urls html
CTCF_in_10a_data html
CTCF_in_10a_narrowPeak_grs html
CTCF_in_10a_narrowPeak_urls html
CTCF_in_10a_overlaps_gr html
CTCF_in_10a_profiles_dt html
CTCF_in_10a_profiles_gr html
applySpline html
centerAtMax html
centerFixedSizeGRanges html
chromHMM_demo_bw_states_gr html
chromHMM_demo_chain_url html
chromHMM_demo_data html
chromHMM_demo_overlaps_gr html
chromHMM_demo_segmentation_url html
chromHMM_demo_state_colors html
chromHMM_demo_state_total_widths html
clusteringKmeans html
clusteringKmeansNestedHclust html
col2hex html
crossCorrByRle html
dot-expand_cigar_dt html
dot-expand_cigar_dt_recursive html
dot-rm_dupes html
dot-rm_dupesPE html
easyLoad_bed html
easyLoad_broadPeak html
easyLoad_narrowPeak html
fetchBam html
fragLen_calcStranded html
fragLen_fromMacs2Xls html
ggellipse html
harmonize_seqlengths html
prepare_fetch_GRanges html
quantileGRangesWidth html
safeBrew html
seqsetvis-package html
set_list2memb html
shift_anchor html
ssvFactorizeMembTable html
ssvFeatureBars html
ssvFeatureBinaryHeatmap html
ssvFeatureEuler html
ssvFeaturePie html
ssvFeatureVenn html
ssvFetchBam html
ssvFetchBam.single html
ssvFetchBamPE html
ssvFetchBamPE.single html
ssvFetchBigwig html
ssvFetchBigwig.single html
ssvFetchGRanges html
ssvFetchSignal html
ssvMakeMembTable-methods html
ssvOverlapIntervalSets html
ssvSignalBandedQuantiles html
ssvSignalClustering html
ssvSignalHeatmap html
ssvSignalLineplot html
ssvSignalLineplotAgg html
ssvSignalScatterplot html
test_peaks html
viewGRangesWinSample_dt html
viewGRangesWinSummary_dt html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'seqsetvis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqsetvis' as seqsetvis_1.4.1.zip
* DONE (seqsetvis)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'seqsetvis' successfully unpacked and MD5 sums checked
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seqsetvis.Rcheck/tests_i386/testthat.Rout R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > ## load dependencies > library(testthat) > library(seqsetvis) Loading required package: ggplot2 > library(data.table) > > ## test package > test_check(package = "seqsetvis") == testthat results =========================================================== [ OK: 553 | SKIPPED: 33 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 91.26 5.18 94.57 |
seqsetvis.Rcheck/tests_x64/testthat.Rout R version 3.6.1 (2019-07-05) -- "Action of the Toes" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > ## load dependencies > library(testthat) > library(seqsetvis) Loading required package: ggplot2 > library(data.table) > > ## test package > test_check(package = "seqsetvis") == testthat results =========================================================== [ OK: 553 | SKIPPED: 33 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 96.85 3.53 97.51 |
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seqsetvis.Rcheck/examples_i386/seqsetvis-Ex.timings
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seqsetvis.Rcheck/examples_x64/seqsetvis-Ex.timings
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