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INSTALL report for qusage on tokay2

This page was generated on 2019-10-16 12:28:26 -0400 (Wed, 16 Oct 2019).

Package 1299/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qusage 2.18.0
Christopher Bolen
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/qusage
Branch: RELEASE_3_9
Last Commit: 8f2b583
Last Changed Date: 2019-05-02 11:53:44 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: qusage
Version: 2.18.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/qusage_2.18.0.tar.gz && rm -rf qusage.buildbin-libdir && mkdir qusage.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qusage.buildbin-libdir qusage_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL qusage_2.18.0.zip && rm qusage_2.18.0.tar.gz qusage_2.18.0.zip
StartedAt: 2019-10-15 18:57:47 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:59:06 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 79.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/qusage_2.18.0.tar.gz && rm -rf qusage.buildbin-libdir && mkdir qusage.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qusage.buildbin-libdir qusage_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL qusage_2.18.0.zip && rm qusage_2.18.0.tar.gz qusage_2.18.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 64 8775k   64 5680k    0     0  31.4M      0 --:--:-- --:--:-- --:--:-- 32.4M
100 8775k  100 8775k    0     0  42.1M      0 --:--:-- --:--:-- --:--:-- 43.5M

install for i386

* installing *source* package 'qusage' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'qusage'
    finding HTML links ... done
    GeneSets                                html  
    QSarray-class                           html  
    aggregateGeneSet                        html  
    calcBayesCI                             html  
    calcVIF                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpU3SOb4/R.INSTALL50018a85b52/qusage/man/calcVIF.Rd:12: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    combinePDFs                             html  
    eset.full                               html  
    fluVaccine                              html  
    getXcoords                              html  
    makeComparison                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpU3SOb4/R.INSTALL50018a85b52/qusage/man/makeComparison.Rd:13: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    newQSarray                              html  
    pVal                                    html  
    plotCIs                                 html  
    plotCIsGenes                            html  
    plotCombinedPDF                         html  
    plotDensityCurves                       html  
    plotGeneSetDistributions                html  
    qgen                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpU3SOb4/R.INSTALL50018a85b52/qusage/man/qgen.Rd:21: file link 'corStruct' in package 'nlme' does not exist and so has been treated as a topic
    qsTable                                 html  
    qusage                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpU3SOb4/R.INSTALL50018a85b52/qusage/man/qusage.Rd:12: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    read.gmt                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'qusage' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qusage' as qusage_2.18.0.zip
* DONE (qusage)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'qusage' successfully unpacked and MD5 sums checked