Chloe H. Lee
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/proBatch |
| Branch: RELEASE_3_9 |
| Last Commit: 6640beb |
| Last Changed Date: 2019-05-02 11:54:14 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:43:46 -0400 (Wed, 16 Oct 2019).
| Package 1251/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| proBatch 1.0.0 Chloe H. Lee
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: proBatch |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/proBatch_1.0.0.tar.gz && rm -rf proBatch.buildbin-libdir && mkdir proBatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proBatch.buildbin-libdir proBatch_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL proBatch_1.0.0.zip && rm proBatch_1.0.0.tar.gz proBatch_1.0.0.zip |
| StartedAt: 2019-10-15 20:48:18 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:49:27 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 68.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/proBatch_1.0.0.tar.gz && rm -rf proBatch.buildbin-libdir && mkdir proBatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proBatch.buildbin-libdir proBatch_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL proBatch_1.0.0.zip && rm proBatch_1.0.0.tar.gz proBatch_1.0.0.zip
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install for i386
* installing *source* package 'proBatch' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'proBatch'
finding HTML links ... done
adjust_batch_trend html
center_peptide_batch_medians html
color_list_to_df html
correct_batch_effects html
correct_with_ComBat html
create_peptide_annotation html
date_to_sample_order html
dates_to_posix html
dot-corr_distribution html
dot-corr_distribution_prot html
example_peptide_annotation html
example_proteome html
example_proteome_matrix html
example_sample_annotation html
fit_nonlinear html
generate_colors_for_numeric html
get_peptide_corr_df html
get_sample_corr_distrib html
log_transform html
long_to_matrix html
matrix_to_long html
merge_rare_levels html
normalize html
normalize_data html
normalize_sample_medians html
plot_PCA html
plot_PVCA html
plot_corr_matrix html
plot_heatmap html
plot_hierarchical_clustering html
plot_iRT html
plot_peptide_corr_distribution html
plot_peptides_of_one_protein html
plot_protein_corrplot html
plot_sample_corr_distribution html
plot_sample_corr_heatmap html
plot_sample_mean_or_boxplot html
plot_single_feature html
plot_spike_in html
plot_with_fitting_curve html
proBatch html
quantile_normalize html
sample_annotation_to_colors html
sample_color_scheme html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'proBatch' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'proBatch' as proBatch_1.0.0.zip
* DONE (proBatch)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'proBatch' successfully unpacked and MD5 sums checked