Evarist Planet
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/phenoTest |
| Branch: RELEASE_3_9 |
| Last Commit: eafcd46 |
| Last Changed Date: 2019-05-02 11:53:21 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:24:39 -0400 (Wed, 16 Oct 2019).
| Package 1205/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| phenoTest 1.32.0 Evarist Planet
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: phenoTest |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/phenoTest_1.32.0.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.32.0.zip && rm phenoTest_1.32.0.tar.gz phenoTest_1.32.0.zip |
| StartedAt: 2019-10-15 21:15:02 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 21:16:14 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 72.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/phenoTest_1.32.0.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.32.0.zip && rm phenoTest_1.32.0.tar.gz phenoTest_1.32.0.zip
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install for i386
* installing *source* package 'phenoTest' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** help
*** installing help indices
converting help for package 'phenoTest'
finding HTML links ... done
ClusterPhenoTest html
ExpressionPhenoTest html
barplotSignatures-methods html
barplotSignifSignatures-methods html
epheno-class html
finding level-2 HTML links ... done
epheno html
epheno2html html
ephenoGetters html
eset html
eset.genelevel html
eset2genelevel html
export2CSV-methods html
export2CSV html
findCopyNumber html
genesInArea html
getEsPositions html
getGo html
getGseaSignatures html
getKegg html
getVars2test-methods html
getVars2test html
gsea html
gsea.kegg.go html
gsea.subset html
gsea2html html
gseaData-class html
gseaSignatures-class html
gseaSignatures-methods html
gseaSignatures html
gseaSignaturesSign-class html
gseaSignaturesVar-class html
gseaSignificance html
gseaSignificanceSign-class html
gseaSignificanceVar-class html
heatmapPhenoTest-methods html
heatmapPhenoTest html
pAdjust-methods html
pAdjust html
pca html
phenoTest-package html
plot.gsea html
plot.gseaSignatures html
plots4epheno html
show-methods html
smoothCoxph html
summary.gsea html
summary.gseaSignificance html
write.html html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'phenoTest' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
* MD5 sums
packaged installation of 'phenoTest' as phenoTest_1.32.0.zip
* DONE (phenoTest)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'phenoTest' successfully unpacked and MD5 sums checked