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INSTALL report for mlm4omics on malbec2

This page was generated on 2019-10-16 12:15:09 -0400 (Wed, 16 Oct 2019).

Package 1025/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mlm4omics 1.2.0
Irene SL Zeng
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/mlm4omics
Branch: RELEASE_3_9
Last Commit: 8c2d5ac
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ ERROR ] ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  ERROR  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: mlm4omics
Version: 1.2.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL mlm4omics
StartedAt: 2019-10-15 18:21:54 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:22:59 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 64.7 seconds
RetCode: 1
Status:  ERROR 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL mlm4omics
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘mlm4omics’ ...
** using staged installation
** libs
"/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/mmlm_code.stan
Wrote C++ file "stan_files/mmlm_code.cc"
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"../inst/include" -I"`"/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c stan_files/mmlm_code.cc -o stan_files/mmlm_code.o
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:355:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
     explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) )
                                 ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
                                                                 ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn()
                               ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
     shared_ptr( std::auto_ptr && r ): px(r.get()), pn()
                      ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr & r )
                                  ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr && r )
                                  ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/shared_ptr.hpp:17:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
         this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this );
                                      ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/integer_log2.hpp:19:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/linear_congruential.hpp:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/additive_combine.hpp:27,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:15,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/pending/integer_log2.hpp: At global scope:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/pending/integer_log2.hpp:7:59: note: #pragma message: This header is deprecated. Use  instead.
 BOOST_HEADER_DEPRECATED("");
                                                           ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128 {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct unpacket_traits { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct unpacket_traits { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 struct palign_impl
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 struct palign_impl
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 struct palign_impl
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 ptranspose(PacketBlock& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 ptranspose(PacketBlock& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 ptranspose(PacketBlock& kernel) {
                                  ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:374:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(4) float}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper::type>::type type;
                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(4) float}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper::type>::type type;
                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper::type>::type type;
                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/typedefs.hpp:10:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper::type>::type type;
                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/typedefs.hpp:10:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/meta/operands_and_partials.hpp:20:14:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/meta/operands_and_partials.hpp:23:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:40:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:40:41:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0> >, const Eigen::CwiseNullaryOp, Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:40:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:29:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, 1, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:32:25:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, -1, 1, true>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, 1, true>, -1, 1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock, -1, 1, true>, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:32:33:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Transpose >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:20:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_lpnorm<1, double>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::internal::member_lpnorm<1, double>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::internal::member_lpnorm<1, double>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7:   required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:33:34:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, 1, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:63:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:70:21:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:70:21:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:70:25:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:70:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:70:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:112:33:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/max.hpp:23:60:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/to_row_vector.hpp:30:32:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp:13:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp:26:31:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp:27:19:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp:28:39:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0, 5>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Transpose >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp:28:39:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp:37:40:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/welford_var_estimator.hpp:28:37:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::TriangularView >, 2>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::TriangularView >, 2>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::TriangularView >, 2>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::TriangularView >, 2>, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::TriangularView >, 2>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::TriangularView >, 2>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/wishart_rng.hpp:32:41:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp:27:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp:27:40:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp:62:17:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_cholesky_rng.hpp:70:50:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1>, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1>, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 1>, Eigen::Matrix, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 1>, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 1>, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_rng.hpp:79:67:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:336,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp: In function ‘typename stan::return_type::type stan::math::poisson_log_glm_lpmf(const T_y&, const T_x&, const T_alpha&, const T_beta&)’:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:64:59: warning: typedef ‘T_alpha_val’ locally defined but not used [-Wunused-local-typedefs]
       typename partials_return_type::type>::type T_alpha_val;
                                                           ^~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/functional/invocation/detail/that_ptr.hpp:13:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/functional/invocation/invoke.hpp:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/functional/adapter/fused.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/functional/generation/make_fused.hpp:13,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/include/make_fused.hpp:11,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint/util/resize.hpp:28,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint.hpp:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:46,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:344,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
 template T * get_pointer(std::auto_ptr const& p)
                                        ^~~~~~~~
In file included from /usr/include/c++/7/bits/locale_conv.h:41:0,
                 from /usr/include/c++/7/locale:43,
                 from /usr/include/c++/7/iomanip:43,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:52,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from stan_files/mmlm_code.cc:1:
/usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here
   template class auto_ptr;
                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:109:6:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:46:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:112:25:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:114:60:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:54:   required from ‘struct Eigen::internal::accessors_level, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:153:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:153:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, -1, false> >, 2>, Eigen::Transpose, -1, -1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:154:32:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Block, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Block, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Block, -1, -1, false>, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:160:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:161:22:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:58:34:   required from ‘class Eigen::RefBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:192:76:   required from ‘class Eigen::Ref >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:60:10:   required from ‘class Eigen::LLT >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:811:41:   required from ‘struct Eigen::internal::mapbase_evaluator, 0, Eigen::OuterStride<> >, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:896:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:936:8:   required from ‘struct Eigen::internal::evaluator > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:43:26:   required from ‘struct Eigen::internal::traits > >::match > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:199:63:   required by substitution of ‘template Eigen::Ref >::Ref(const Eigen::DenseBase&, typename Eigen::internal::enable_if<(bool)(Eigen::internal::traits > >::match::MatchAtCompileTime), Derived>::type*) [with Derived = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:93:56:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:107:67:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:178:78:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:178:78:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:189:64:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:190:63:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:192:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:192:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:194:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:6:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:41,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:31:32: error: ‘std::index_sequence’ has not been declared
                           std::index_sequence i) {
                                ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:31:46: error: expected ‘,’ or ‘...’ before ‘<’ token
                           std::index_sequence i) {
                                              ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:31:54: error: ‘apply_impl’ function uses ‘auto’ type specifier without trailing return type
                           std::index_sequence i) {
                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:31:54: note: deduced return type only available with -std=c++14 or -std=gnu++14
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:48:48: error: ‘apply’ function uses ‘auto’ type specifier without trailing return type
 constexpr auto apply(const F& f, const Tuple& t) {
                                                ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:48:48: note: deduced return type only available with -std=c++14 or -std=gnu++14
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp: In function ‘constexpr auto stan::math::internal::apply(const F&, const Tuple&)’:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:49:32: error: ‘make_index_sequence’ is not a member of ‘std’
   return apply_impl(f, t, std::make_index_sequence{}>{});
                                ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:49:32: note: suggested alternative:
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/container/vector/vector.hpp:28:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/container/vector/vector10.hpp:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/view/transform_view/transform_view.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/algorithm/transformation/transform.hpp:11,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/view/zip_view/detail/begin_impl.hpp:14,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/view/zip_view/zip_view.hpp:16,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/view/zip_view.hpp:12,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/include/zip_view.hpp:11,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint/util/resize.hpp:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/numeric/odeint.hpp:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:46,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:344,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/fusion/support/detail/index_sequence.hpp:59:12: note:   ‘boost::fusion::detail::make_index_sequence’
     struct make_index_sequence
            ^~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:6:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:41,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:49:77: error: expected primary-expression before ‘{’ token
   return apply_impl(f, t, std::make_index_sequence{}>{});
                                                                             ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:49:77: error: expected ‘)’ before ‘{’ token
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp: At global scope:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:151:14: error: ‘result_of_t’ in namespace ‘std’ does not name a template type
       = std::result_of_t;
              ^~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:156:42: error: ‘FReturnType’ was not declared in this scope
   std::array::value> M_;
                                          ^~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:156:42: note: suggested alternative: ‘return_type’
   std::array::value> M_;
                                          ^~~~~~~~~~~
                                          return_type
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:156:53: error: template argument 1 is invalid
   std::array::value> M_;
                                                     ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:156:61: error: template argument 2 is invalid
   std::array::value> M_;
                                                             ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:408:39: error: ‘operator()’ function uses ‘auto’ type specifier without trailing return type
   auto operator()(const Targs&... args) {
                                       ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:408:39: note: deduced return type only available with -std=c++14 or -std=gnu++14
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp: In member function ‘std::vector stan::math::adj_jac_vari::build_return_varis_and_vars(const std::vector&)’:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:349:9: error: invalid types ‘int[int]’ for array subscript
     M_[0] = val_y.size();
         ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:350:32: error: invalid types ‘int[int]’ for array subscript
     std::vector var_y(M_[0]);
                                ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp: In member function ‘Eigen::Matrix stan::math::adj_jac_vari::build_return_varis_and_vars(const Eigen::Matrix&)’:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:375:9: error: invalid types ‘int[int]’ for array subscript
     M_[0] = val_y.rows();
         ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:376:9: error: invalid types ‘int[int]’ for array subscript
     M_[1] = val_y.cols();
         ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:377:40: error: invalid types ‘int[int]’ for array subscript
     Eigen::Matrix var_y(M_[0], M_[1]);
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:377:47: error: invalid types ‘int[int]’ for array subscript
     Eigen::Matrix var_y(M_[0], M_[1]);
                                               ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp: In member function ‘void stan::math::adj_jac_vari::chain()’:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:530:5: error: ‘FReturnType’ was not declared in this scope
     FReturnType y_adj;
     ^~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:530:5: note: suggested alternative: ‘return_type’
     FReturnType y_adj;
     ^~~~~~~~~~~
     return_type
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:532:38: error: ‘y_adj’ was not declared in this scope
     internal::build_y_adj(y_vi_, M_, y_adj);
                                      ^~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:536:16: error: use of ‘auto’ in lambda parameter declaration only available with -std=c++14 or -std=gnu++14
         [this](auto&&... args) { this->accumulate_adjoints(args...); },
                ^~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:536:26: error: expansion pattern ‘int&&’ contains no argument packs
         [this](auto&&... args) { this->accumulate_adjoints(args...); },
                          ^~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp: In lambda function:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:536:60: error: ‘args’ was not declared in this scope
         [this](auto&&... args) { this->accumulate_adjoints(args...); },
                                                            ^~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:536:60: note: suggested alternative: ‘Targs’
         [this](auto&&... args) { this->accumulate_adjoints(args...); },
                                                            ^~~~
                                                            Targs
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp: At global scope:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:616:40: error: ‘adj_jac_apply’ function uses ‘auto’ type specifier without trailing return type
 auto adj_jac_apply(const Targs&... args) {
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:616:40: note: deduced return type only available with -std=c++14 or -std=gnu++14
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:41:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:61:62: error: ‘multiply_adjoint_jacobian’ function uses ‘auto’ type specifier without trailing return type
                                  const Eigen::VectorXd& adj) const {
                                                              ^~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/ordered_constrain.hpp:61:62: note: deduced return type only available with -std=c++14 or -std=gnu++14
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:42:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp:62:62: error: ‘multiply_adjoint_jacobian’ function uses ‘auto’ type specifier without trailing return type
                                  const Eigen::VectorXd& adj) const {
                                                              ^~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp:62:62: note: deduced return type only available with -std=c++14 or -std=gnu++14
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:48:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/simplex_constrain.hpp:67:62: error: ‘multiply_adjoint_jacobian’ function uses ‘auto’ type specifier without trailing return type
                                  const Eigen::VectorXd& adj) const {
                                                              ^~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/simplex_constrain.hpp:67:62: note: deduced return type only available with -std=c++14 or -std=gnu++14
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/idas_forward_system.hpp:149:18:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:96:21:   required from ‘class Eigen::Tridiagonalization >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:105:62:   required from ‘class Eigen::SelfAdjointEigenSolver >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product >, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:24:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:42:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:60:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:67:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:67:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/covar_adaptation.hpp:29:67:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:65:   recursively required by substitution of ‘template typename Eigen::ScalarBinaryOpTraits::Scalar, Eigen::internal::scalar_product_op::Scalar> >::ReturnType Eigen::MatrixBase >::dot(const Eigen::MatrixBase&) const [with OtherDerived = ]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:65:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:27:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:78:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/var_adaptation.hpp:28:78:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:189:58:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:189:67:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:190:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:190:71:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:204:65:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:205:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:273:19:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:274:23:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product, Eigen::Matrix, 0>, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:363:34:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:477:26:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:477:64:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:477:73:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:477:73:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:324:60:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:324:61:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, const Eigen::ArrayWrapper > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:324:75:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::ArrayWrapper > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:384:79:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, 1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:97:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false>, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, 1, -1, false>, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, 1, -1, false>, 1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock, 1, -1, false>, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:116:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:43:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:32:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:225:48:   required from ‘void Eigen::DenseBase::transposeInPlace() [with Derived = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:109:24:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 0>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:78:44:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::LLT<_MatrixType>&) [with Derived = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:413:57:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 0> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase >, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:78:52:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::LLT<_MatrixType>&) [with Derived = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:413:57:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/to_matrix.hpp:118:17:   required from ‘Eigen::Matrix stan::math::to_matrix(const std::vector&, int, int) [with T = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/read_dense_inv_metric.hpp:38:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   required from ‘class Eigen::Array’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67:   required from ‘Derived& Eigen::ArrayBase::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper >; Eigen::ArrayBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:291:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:27:67:   required from ‘Derived& Eigen::ArrayBase::operator+=(const Scalar&) [with Derived = Eigen::ArrayWrapper >; Eigen::ArrayBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_fullrank.hpp:291:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Inverse.h:69:7:   required from ‘class Eigen::InverseImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Inverse.h:43:7:   required from ‘class Eigen::Inverse >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:48:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, true>, -1, 1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, false>; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:34:70:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:244:25:   required from ‘static Eigen::internal::lpNorm_selector::RealScalar Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Matrix; Eigen::internal::lpNorm_selector::RealScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = -1; Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:67:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl >, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block >, -1, 1, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:39:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl >, -1, 1, true>, -1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block >, -1, 1, true>, -1, 1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock >, -1, 1, true>, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:65:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl >, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block >, 1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:97:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, 1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl >, 1, -1, false>, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block >, 1, -1, false>, 1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock >, 1, -1, false>, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:116:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/softmax.hpp:50:22:   required from ‘Eigen::Matrix stan::math::softmax(const Eigen::Matrix&) [with T = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:34:21:   required from ‘Eigen::VectorXd stan::math::internal::softmax_op::operator()(const std::array&, const VectorXd&) [with long unsigned int size = 1; Eigen::VectorXd = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:414:39:   required from ‘auto stan::math::adj_jac_vari::operator()(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:619:15:   required from ‘auto stan::math::adj_jac_apply(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:78:51:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/softmax.hpp:50:22:   required from ‘Eigen::Matrix stan::math::softmax(const Eigen::Matrix&) [with T = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:34:21:   required from ‘Eigen::VectorXd stan::math::internal::softmax_op::operator()(const std::array&, const VectorXd&) [with long unsigned int size = 1; Eigen::VectorXd = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:414:39:   required from ‘auto stan::math::adj_jac_vari::operator()(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:619:15:   required from ‘auto stan::math::adj_jac_apply(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:78:51:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/softmax.hpp:50:9:   required from ‘Eigen::Matrix stan::math::softmax(const Eigen::Matrix&) [with T = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:34:21:   required from ‘Eigen::VectorXd stan::math::internal::softmax_op::operator()(const std::array&, const VectorXd&) [with long unsigned int size = 1; Eigen::VectorXd = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:414:39:   required from ‘auto stan::math::adj_jac_vari::operator()(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:619:15:   required from ‘auto stan::math::adj_jac_apply(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:78:51:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/softmax.hpp:51:24:   required from ‘Eigen::Matrix stan::math::softmax(const Eigen::Matrix&) [with T = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:34:21:   required from ‘Eigen::VectorXd stan::math::internal::softmax_op::operator()(const std::array&, const VectorXd&) [with long unsigned int size = 1; Eigen::VectorXd = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:414:39:   required from ‘auto stan::math::adj_jac_vari::operator()(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/adj_jac_apply.hpp:619:15:   required from ‘auto stan::math::adj_jac_apply(const Targs& ...) [with F = stan::math::internal::softmax_op; Targs = {Eigen::Matrix}]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/softmax.hpp:78:51:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:433:37:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:25:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:25:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:22:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:32:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:22:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:32:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:491:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:69:75:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Eigen::SelfAdjointView::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:22:71:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:390:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename conditional::type LhsPacket;
                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:391:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename conditional::type RhsPacket;
                                                                         ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:392:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename conditional::type ResPacket;
                                                                         ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, 1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47:   required from ‘class Eigen::VectorBlock, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:535:27:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/get_base1.hpp:255:39:   required from ‘Eigen::Matrix stan::math::get_base1(const Eigen::Matrix&, size_t, const char*, size_t) [with T = double; size_t = long unsigned int]’
stan_files/mmlm_code.hpp:1442:42:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/add.hpp:45:20:   required from ‘Eigen::Matrix::type, R, C> stan::math::add(const Eigen::Matrix&, const T2&) [with T1 = double; T2 = double; int R = 1; int C = -1; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1442:32:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28:   required from ‘struct Eigen::internal::traits, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/add.hpp:45:20:   required from ‘Eigen::Matrix::type, R, C> stan::math::add(const Eigen::Matrix&, const T2&) [with T1 = double; T2 = double; int R = 1; int C = -1; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1442:32:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/add.hpp:45:20:   required from ‘Eigen::Matrix::type, R, C> stan::math::add(const Eigen::Matrix&, const T2&) [with T1 = double; T2 = double; int R = 1; int C = -1; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1442:32:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply.hpp:57:13:   required from ‘Eigen::Matrix stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = 1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.hpp:1450:44:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/add.hpp:29:13:   required from ‘Eigen::Matrix::type, R, C> stan::math::add(const Eigen::Matrix&, const Eigen::Matrix&) [with T1 = double; T2 = double; int R = 1; int C = -1; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1450:32:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/add.hpp:29:13:   required from ‘Eigen::Matrix::type, R, C> stan::math::add(const Eigen::Matrix&, const Eigen::Matrix&) [with T1 = double; T2 = double; int R = -1; int C = 1; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1454:46:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/add.hpp:45:20:   required from ‘Eigen::Matrix::type, R, C> stan::math::add(const Eigen::Matrix&, const T2&) [with T1 = double; T2 = double; int R = -1; int C = 1; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1454:42:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, 1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:316:35:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, -1, false>, -1, 1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:316:35:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, -1, false>, 1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:317:35:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, -1, -1, false>, -1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:318:41:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:491:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, Eigen::internal::gebp_kernel::ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; Eigen::internal::gebp_kernel::ResScalar = double]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:110:15:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Eigen::SelfAdjointView::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:22:71:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1532:86: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
               (SwappedTraits::LhsProgress!=8 || unpacket_traits::size==nr))
                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1584:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
               typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf;
                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1585:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
               typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf;
                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1586:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
               typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf;
                                                                                                                                       ^~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1587:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
               typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf;
                                                                                                                                       ^~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:151:52:   required from ‘void Eigen::internal::tribb_kernel::operator()(Eigen::internal::tribb_kernel::ResScalar*, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int UpLo = 2; Eigen::internal::tribb_kernel::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:114:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Eigen::SelfAdjointView::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:22:71:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper::type>::type type;
                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:151:52:   required from ‘void Eigen::internal::tribb_kernel::operator()(Eigen::internal::tribb_kernel::ResScalar*, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int UpLo = 2; Eigen::internal::tribb_kernel::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:114:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Eigen::SelfAdjointView::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:22:71:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/max.hpp:24:21:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) long long int}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block >, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:25:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block >, 1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block >, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block >, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block >, 1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block >, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:25:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block >, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block >, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block >, -1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:351:41:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl >, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:357:39:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:48:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:45:19:   required from ‘static double stan::math::internal::dot_product_vari::var_dot(stan::math::vari**, stan::math::vari**, size_t) [with T1 = stan::math::var; T2 = stan::math::var; size_t = long unsigned int]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:134:21:   required from ‘stan::math::internal::dot_product_vari::dot_product_vari(typename stan::math::internal::dot_product_store_type::type, typename stan::math::internal::dot_product_store_type::type, size_t) [with T1 = stan::math::var; T2 = stan::math::var; typename stan::math::internal::dot_product_store_type::type = stan::math::vari**; typename stan::math::internal::dot_product_store_type::type = stan::math::vari**; size_t = long unsigned int]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/tcrossprod.hpp:48:57:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Matrix; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/log_softmax.hpp:77:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:447:43:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::Matrix, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:144:30:   required from ‘bool Eigen::DenseBase::hasNaN() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/BooleanRedux.h:158:10:   required from ‘bool Eigen::DenseBase::allFinite() const [with Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_finite.hpp:29:9:   required from ‘static void stan::math::internal::finite, true>::check(const char*, const char*, const Eigen::Matrix&) [with T = double; int R = -1; int C = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/scal/err/check_finite.hpp:46:59:   required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_diag_inv_metric.hpp:24:60:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:185:29:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:43:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:321:18:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:43:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:321:18:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:22:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:32:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1309:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Matrix; MemberOp = Eigen::internal::member_lpnorm<1, double>; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   required from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:194:9:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, Eigen::internal::member_lpnorm<1, double>, 0> >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:33:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:491:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverMatrix.h:153:19:   required from ‘static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 0]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:102:12:   required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Side = 1; int Mode = 2]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:179:21:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, -1, false>; _MatrixType = Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:511:37:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, -1, false>; _MatrixType = Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:113:49:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1973:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
           PacketBlock kernel;
                                                              ^~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Block, -1, -1, false>, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Block, -1, -1, false>, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Block, -1, -1, false>, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Block, -1, -1, false>, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Block, -1, -1, false>, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, Eigen::Block, -1, -1, false>, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >, Eigen::Block, -1, -1, false>, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >, Eigen::Block, -1, -1, false>, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false> >, Eigen::Block, -1, -1, false>, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false> >, Eigen::Block, -1, -1, false>, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:316:35:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl >, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, -1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:316:35:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:317:35:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:318:41:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl >, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:45:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:368:46:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:368:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:295:10:   required from ‘void Eigen::MatrixBase::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:861:7:   required from ‘void Eigen::internal::tridiagonal_qr_step(RealScalar*, RealScalar*, Index, Index, Scalar*, Index) [with int StorageOrder = 0; RealScalar = double; Scalar = double; Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:520:87:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:69:8:   required from ‘class Eigen::internal::visitor_evaluator, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:110:17:   required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::min_coeff_visitor, -1, 1, false> >; Derived = Eigen::Block, -1, 1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:229:3:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::minCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block, -1, 1, false>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:535:7:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:318:35:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:318:46:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:351:67:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, 6>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:35:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:174:81:   required from ‘class Eigen::DenseBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, 6>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:35:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper::type>::type type;
                                                                                        ^~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:354:32:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:372:58:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:380:34:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_linesearch.hpp:253:27:   required from ‘int stan::optimization::WolfeLineSearch(FunctorType&, Scalar&, XType&, Scalar&, XType&, const XType&, const XType&, const Scalar&, const XType&, const Scalar&, const Scalar&, const Scalar&, const Scalar&, const Scalar&) [with FunctorType = stan::optimization::ModelAdaptor; Scalar = double; XType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:205:36:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:35:53:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, 5>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:35:53:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, Eigen::Matrix >, const Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:35:41:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:38:46:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, Eigen::Transpose >, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, Eigen::Transpose >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 0>, Eigen::Transpose >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:41:25:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product, Eigen::Matrix, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Product, Eigen::Matrix, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Product, Eigen::Matrix, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Product, Eigen::Matrix, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Product, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:56:24:   required from ‘void stan::optimization::BFGSUpdate_HInv::search_direction(stan::optimization::BFGSUpdate_HInv::VectorT&, const VectorT&) const [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:253:9:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:43:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:110:34:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:137:17:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:93:19:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:48:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/dot_product.hpp:26:19:   required from ‘double stan::math::dot_product(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = 1; int C1 = -1; int R2 = 1; int C2 = -1]’
stan_files/mmlm_code.hpp:1442:85:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:60:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/dot_product.hpp:26:19:   required from ‘double stan::math::dot_product(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = -1; int C1 = 1; int R2 = 1; int C2 = -1]’
stan_files/mmlm_code.hpp:1468:55:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:52:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, true>, -1, 1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, false>; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp:34:70:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30:   required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:21:   required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:167:9:   required from ‘void Eigen::internal::tribb_kernel::operator()(Eigen::internal::tribb_kernel::ResScalar*, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int UpLo = 2; Eigen::internal::tribb_kernel::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:114:13:   required from ‘static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 1; bool ConjugateRhs = false; int UpLo = 2; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12:   required from ‘static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Matrix; int UpLo = 2; typename MatrixType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62:   required from ‘Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Matrix; _MatrixType = Eigen::Matrix; unsigned int UpLo = 2; Eigen::SelfAdjointView::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:22:71:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, -1, 1, true>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:63:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:244:34:   required from ‘static Eigen::internal::lpNorm_selector::RealScalar Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Matrix; Eigen::internal::lpNorm_selector::RealScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = -1; Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:67:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator >, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block >, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block >, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block >, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block >, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block >, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block >, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block >, 1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block >, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block >, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block >, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block >, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:43:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block >, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:321:18:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block >, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block >, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block >, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block >, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block >, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:43:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block >, -1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:321:18:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:433:14:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:361:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:455:5:   required from ‘void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase&, Eigen::DenseBase&, const Eigen::JacobiRotation&) [with VectorX = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; VectorY = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; OtherScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:297:40:   required from ‘void Eigen::MatrixBase::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:861:7:   required from ‘void Eigen::internal::tridiagonal_qr_step(RealScalar*, RealScalar*, Index, Index, Scalar*, Index) [with int StorageOrder = 0; RealScalar = double; Scalar = double; Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:520:87:   required from ‘Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1337:8:   required from ‘struct Eigen::internal::evaluator_wrapper_base, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416:8:   required from ‘struct Eigen::internal::unary_evaluator, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:380:19:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:22:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:321:18:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:352:102:   required from ‘struct Eigen::internal::plain_object_eval, -1, -1, false>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Transpose, -1, -1, false>, 1, -1, false> >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:38:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Transpose >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, Eigen::Transpose >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:20:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, false>, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:361:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:91:22:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:361:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:48:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:53:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, false>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:33:74:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:34:60:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointRank2Update.h:34:23:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:69:8:   required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:110:17:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:318:7:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Inverse.h:69:7:   required from ‘class Eigen::InverseImpl >, Eigen::SolverStorage>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Inverse.h:43:7:   required from ‘class Eigen::Inverse > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/InverseImpl.h:28:12:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1>, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1>, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl, 1>, Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve, 1>, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/mdivide_left_ldlt.hpp:30:79:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/inv_wishart_log.hpp:37:55:   required from ‘typename boost::math::tools::promote_args::type stan::math::inv_wishart_log(const Eigen::Matrix&, const T_dof&, const Eigen::Matrix&) [with bool propto = false; T_y = double; T_dof = int; T_scale = double; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1127:53:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 2>, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 2>, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, 2>, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl >, 2>, Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve >, 2>, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:61:52:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/run_adaptive_sampler.hpp:53:11:   required from ‘void stan::services::util::run_adaptive_sampler(Sampler&, Model&, std::vector&, int, int, int, int, bool, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Sampler = stan::mcmc::adapt_dense_e_nuts, boost::random::linear_congruential_engine > >; Model = model_mmlm_code_namespace::model_mmlm_code; RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:107:35:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, stan::io::var_context&, stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp:166:38:   required from ‘int stan::services::sample::hmc_nuts_dense_e_adapt(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, bool, int, double, double, int, double, double, double, double, unsigned int, unsigned int, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:624:37:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/families/normal_meanfield.hpp:402:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/advi.hpp:240:29:   required from ‘double stan::variational::advi::adapt_eta(Q&, int, stan::callbacks::logger&) const [with Model = model_mmlm_code_namespace::model_mmlm_code; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/variational/advi.hpp:497:26:   required from ‘int stan::variational::advi::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_mmlm_code_namespace::model_mmlm_code; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/experimental/advi/meanfield.hpp:87:11:   required from ‘int stan::services::experimental::advi::meanfield(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, int, int, double, double, bool, int, int, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:886:18:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/meta/operands_and_partials.hpp:53:35:   required from ‘stan::math::internal::ops_partials_edge >::ops_partials_edge(const Op&) [with int R = 1; int C = -1; stan::math::internal::ops_partials_edge >::Op = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/scal/meta/operands_and_partials.hpp:80:42:   required from ‘stan::math::operands_and_partials::operands_and_partials(const Op1&, const Op2&, const Op3&) [with Op1 = Eigen::Matrix; Op2 = int; Op3 = int; Op4 = double; Op5 = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:67:46:   required from ‘typename stan::return_type::type stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = int; T_scale = int; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:34:50:   required from ‘typename stan::return_type::type stan::math::normal_log(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = int; T_scale = int; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1118:52:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/LDLT_factor.hpp:95:73:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:106:37:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:25:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1307:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Matrix; MemberOp = Eigen::internal::member_lpnorm<1, double>; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   required from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:194:9:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, Eigen::internal::member_lpnorm<1, double>, 0> >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:33:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:25:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1309:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Matrix; MemberOp = Eigen::internal::member_lpnorm<1, double>; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   required from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:194:9:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, Eigen::internal::member_lpnorm<1, double>, 0> >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:33:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block >, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block >, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:441:77:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:352:102:   required from ‘struct Eigen::internal::plain_object_eval >, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block >, -1, 1, false>; Lhs = Eigen::Block >, -1, -1, false>; Rhs = Eigen::Transpose >, 1, -1, false> >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block >, -1, 1, false>; Src = Eigen::Product >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product >, -1, -1, false>, Eigen::Transpose >, 1, -1, false> >, 0>; ExpressionType = Eigen::Block >, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:38:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block >, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block >, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block >, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block >, -1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:321:18:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, -1, false>, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:352:102:   required from ‘struct Eigen::internal::plain_object_eval >, -1, -1, false>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45:   required from ‘struct Eigen::internal::generic_product_impl >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block >, -1, -1, false>, -1, 1, false>; Lhs = Eigen::Block >, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Transpose >, -1, -1, false>, 1, -1, false> >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block >, -1, -1, false>, -1, 1, false>; Src = Eigen::Product >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product >, -1, -1, false>, -1, -1, false>, Eigen::Transpose >, -1, -1, false>, 1, -1, false> >, 0>; ExpressionType = Eigen::Block >, -1, -1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:38:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:52:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:45:19:   required from ‘static double stan::math::internal::dot_product_vari::var_dot(stan::math::vari**, stan::math::vari**, size_t) [with T1 = stan::math::var; T2 = stan::math::var; size_t = long unsigned int]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:134:21:   required from ‘stan::math::internal::dot_product_vari::dot_product_vari(typename stan::math::internal::dot_product_store_type::type, typename stan::math::internal::dot_product_store_type::type, size_t) [with T1 = stan::math::var; T2 = stan::math::var; typename stan::math::internal::dot_product_store_type::type = stan::math::vari**; typename stan::math::internal::dot_product_store_type::type = stan::math::vari**; size_t = long unsigned int]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/tcrossprod.hpp:48:57:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:43:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:76:37:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:361:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply.hpp:57:15:   required from ‘Eigen::Matrix stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.hpp:431:77:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1>, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1>, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl, 1>, Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve, 1>, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/mdivide_left_ldlt.hpp:30:79:   required from ‘Eigen::Matrix::type, R1, C2> stan::math::mdivide_left_ldlt(const stan::math::LDLT_factor&, const Eigen::Matrix&) [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = 1; T1 = double; T2 = double; typename boost::math::tools::promote_args::type = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/trace_inv_quad_form_ldlt.hpp:29:56:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 0, 6>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product >, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp:30:37:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; _Scalar = double; int _Rows = 1; int _Cols = -1; int _Options = 1; int _MaxRows = 1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/add.hpp:45:22:   required from ‘Eigen::Matrix::type, R, C> stan::math::add(const Eigen::Matrix&, const T2&) [with T1 = double; T2 = double; int R = 1; int C = -1; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1442:32:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28:   required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, -1, -1, false>, -1, 1, false>; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:326:21:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:491:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:191:21:   required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_product::ResScalar*, Index, Eigen::internal::general_matrix_matrix_product::ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; Eigen::internal::general_matrix_matrix_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:226:14:   required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; Dest = Eigen::Block, -1, -1, false>; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:97:7:   required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = Eigen::internal::gemm_functor, Eigen::Block, -1, -1, false>, Eigen::Block, -1, -1, false>, Eigen::Block, -1, -1, false>, Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:484:9:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:454:20:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1973:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
           PacketBlock kernel;
                                                              ^~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; bool Conjugate = false; bool PanelMode = false]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:180:17:   required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_product::ResScalar*, Index, Eigen::internal::general_matrix_matrix_product::ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; Eigen::internal::general_matrix_matrix_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:226:14:   required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; Dest = Eigen::Block, -1, -1, false>; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:97:7:   required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = Eigen::internal::gemm_functor, Eigen::Transpose, -1, -1, false> >, Eigen::Block, -1, -1, false>, Eigen::Block, -1, -1, false>, Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:484:9:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:454:20:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1839:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
             PacketBlock kernel;
                                 ^~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1839:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; bool Conjugate = true; bool PanelMode = false]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:374:28:   required from ‘static void Eigen::internal::product_selfadjoint_matrix::run(Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h:507:12:   required from ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::Block, -1, -1, false>; int RhsMode = 0; Eigen::internal::selfadjoint_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:746:109:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, -1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::Block, -1, -1, false>; int ProductTag = 8; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::Block, -1, -1, false>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, Eigen::SelfAdjointShape, Eigen::DenseShape, 8>; Eigen::internal::generic_product_impl_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18:   required from ‘static void Eigen::internal::generic_product_impl_base::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::Block, -1, -1, false>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, Eigen::SelfAdjointShape, Eigen::DenseShape, 8>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 1>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:160:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1839:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1839:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:494:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:339:132:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:383:34:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:24:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:351:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type LhsPacket;
                                                                       ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:352:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type RhsPacket;
                                                                       ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:353:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type ResPacket;
                                                                       ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:24:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:22:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:110:34:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:137:17:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal >, Eigen::Matrix, 0>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:500:31:   required from ‘typename Eigen::internal::traits::Scalar Eigen::MatrixBase::trace() const [with Derived = Eigen::Product >, Eigen::Matrix, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp:32:14:   required from ‘void stan::math::internal::trace_inv_quad_form_ldlt_impl::initializeB(const Eigen::Matrix&, bool) [with T2 = double; int R2 = -1; int C2 = -1; T3 = stan::math::var; int R3 = -1; int C3 = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp:73:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Block, -1, -1, false>; Functor = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Block, -1, -1, false>; Functor = Eigen::internal::assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, -1, -1, false>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, -1, false>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, -1, false>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, -1, -1, false>; _Scalar = double; int _Rows = 1; int _Cols = -1; int _Options = 1; int _MaxRows = 1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/get_base1.hpp:255:39:   required from ‘Eigen::Matrix stan::math::get_base1(const Eigen::Matrix&, size_t, const char*, size_t) [with T = double; size_t = long unsigned int]’
stan_files/mmlm_code.hpp:1442:42:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:52:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/dot_product.hpp:26:19:   required from ‘double stan::math::dot_product(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = 1; int C1 = -1; int R2 = 1; int C2 = -1]’
stan_files/mmlm_code.hpp:1442:85:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose >, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:64:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/dot_product.hpp:26:19:   required from ‘double stan::math::dot_product(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = -1; int C1 = 1; int R2 = 1; int C2 = -1]’
stan_files/mmlm_code.hpp:1468:55:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1309:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Matrix; MemberOp = Eigen::internal::member_lpnorm<1, double>; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   required from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:194:9:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, Eigen::internal::member_lpnorm<1, double>, 0> >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:33:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:451:59:   required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:725:113:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:451:31:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:456:59:   required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:725:113:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block >, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block >, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28:   required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block >, -1, 1, false>; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:326:21:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, -1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block >, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block >, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28:   required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block >, -1, -1, false>, -1, 1, false>; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:326:21:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block >, -1, -1, false>; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:356:24:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Ref >; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Ref >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:115:14:   required from ‘Eigen::LLT::LLT(Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Ref >; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:412:69:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:361:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:494:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:339:132:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:383:34:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::internal::generic_product_impl >, Eigen::Matrix, Eigen::DenseShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:24:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   conj_helper pcj;
                                                              ^~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:61:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, false>; Rhs = Eigen::Block, -1, 1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:352:27:   required from ‘static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:519:51:   required from ‘Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:112:14:   required from ‘Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:667:10:   required from ‘const Eigen::LDLT::PlainObject> Eigen::MatrixBase::ldlt() const [with Derived = Eigen::Matrix; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/err/check_pos_definite.hpp:38:32:   required from ‘void stan::math::check_pos_definite(const char*, const char*, const Eigen::Matrix&) [with T_y = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/util/validate_dense_inv_metric.hpp:24:66:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:35:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:60:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Transpose >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:38:25:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:494:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:244:134:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:383:34:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18:   required from ‘static void Eigen::internal::generic_product_impl_base::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:38:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:75:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type LhsPacket;
                                                                       ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:76:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type RhsPacket;
                                                                       ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:77:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type ResPacket;
                                                                       ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 2, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 2, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 2, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:38:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:287:40:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:383:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:38:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:297:35:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:165:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:367:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:52:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, false>; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:53:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, Eigen::internal::member_sum, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix >, Eigen::internal::member_sum, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, Eigen::internal::member_sum, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7:   required from ‘class Eigen::PartialReduxExpr, const Eigen::Matrix >, Eigen::internal::member_sum, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:522:47:   required from ‘void Eigen::PartialPivLU::compute() [with _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:131:14:   required from ‘Eigen::PartialPivLU& Eigen::PartialPivLU::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:323:10:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, Eigen::Matrix, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 1, 6>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product >, Eigen::Matrix, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 1>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, Eigen::Matrix, 1>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 1>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53:   required from ‘class Eigen::Diagonal >, Eigen::Matrix, 1>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1575:36:   required from ‘struct Eigen::internal::evaluator >, Eigen::Matrix, 1>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:65:8:   required from ‘struct Eigen::internal::evaluator >, Eigen::Matrix, 0>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:494:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, RhsScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:244:134:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:383:34:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18:   required from ‘static void Eigen::internal::generic_product_impl_base::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Transpose, 1, -1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, Eigen::DenseShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:325:38:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:337:23:   required from ‘static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:401:68:   required from ‘static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LLT.h:449:42:   required from ‘Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/cholesky_decompose.hpp:84:16:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   conj_helper pcj;
                                                              ^~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:221:29:   required from ‘static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:269:52:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1307:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Matrix; MemberOp = Eigen::internal::member_lpnorm<1, double>; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   required from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:194:9:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, Eigen::internal::member_lpnorm<1, double>, 0> >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:438:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::PartialReduxExpr, Eigen::internal::member_lpnorm<1, double>, 0>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:33:45:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:491:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:340:25:   required from ‘static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 1; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int Version = 0]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:437:12:   required from ‘static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = false; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:725:113:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::TriangularView, -1, -1, false>, 1>; int ProductTag = 8; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::TriangularView, -1, -1, false>, 1>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, Eigen::DenseShape, Eigen::TriangularShape, 8>; Eigen::internal::generic_product_impl_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1973:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
           PacketBlock kernel;
                                                              ^~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:40:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false> >, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false> >, 1, -1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false> >, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, -1, false> >, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, -1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:40:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:22:   required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:76:37:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:361:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:368:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In instantiation of ‘Index Eigen::internal::first_default_aligned(const Scalar*, Index) [with Scalar = double; Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:246:43:   required from ‘Index Eigen::internal::blas_data_mapper::firstAligned(Index) const [with Scalar = const double; Index = long int; int StorageOrder = 0; int AlignmentType = 0]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:400:9:   required from ‘static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:339:132:   required from ‘static void Eigen::internal::gemv_dense_selector<2, 1, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:383:34:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:24:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/Memory.h:470:10: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return first_aligned::alignment>(array, size);
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:92:14:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase > >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:42:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose > >, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose > >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose > >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose > >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose > >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:61:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = 1; int _Cols = -1; int _Options = 1; int _MaxRows = 1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply.hpp:57:15:   required from ‘Eigen::Matrix stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = 1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.hpp:1450:44:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30:   required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Diagonal, 0>; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:21:   required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Diagonal, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:297:7:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:361:5:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:498:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In instantiation of ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:227:7:   required from ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::internal::selfadjoint_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:746:109:   required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27:   required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33:   required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:367:35:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:60:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs,  IsRowMajor), ConjugateRhs> pcj0;
                                                                                                                         ^~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:60:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:61:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, !IsRowMajor), ConjugateRhs> pcj1;
                                                                                                                         ^~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:61:121: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:492:30:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, Eigen::CwiseNullaryOp, Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl >, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve >, Eigen::CwiseNullaryOp, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:574:9:   required from ‘static void Eigen::internal::Assignment >, Eigen::internal::assign_op::Scalar>, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op::Scalar>&) [with DstXprType = Eigen::Matrix; MatrixType = Eigen::Matrix; Eigen::internal::Assignment >, Eigen::internal::assign_op::Scalar>, Eigen::internal::Dense2Dense>::SrcXprType = Eigen::Inverse > >; typename Eigen::PartialPivLU::Scalar = double; typename DstXprType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:564:26:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/inv_wishart_log.hpp:37:55:   required from ‘typename boost::math::tools::promote_args::type stan::math::inv_wishart_log(const Eigen::Matrix&, const T_dof&, const Eigen::Matrix&) [with bool propto = false; T_y = double; T_dof = int; T_scale = double; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1127:53:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Matrix, 2>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base > >, Eigen::Matrix, 2, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl > >, Eigen::Matrix, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product > >, Eigen::Matrix, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:594:38:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/inv_wishart_log.hpp:37:55:   required from ‘typename boost::math::tools::promote_args::type stan::math::inv_wishart_log(const Eigen::Matrix&, const T_dof&, const Eigen::Matrix&) [with bool propto = false; T_y = double; T_dof = int; T_scale = double; typename boost::math::tools::promote_args::type = double]’
stan_files/mmlm_code.hpp:1127:53:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = 1; int _Cols = -1; int _Options = 1; int _MaxRows = 1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply.hpp:57:15:   required from ‘Eigen::Matrix stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = 1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.hpp:1450:44:   required from ‘void model_mmlm_code_namespace::model_mmlm_code::write_array(RNG&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1091:5:   required from ‘SEXPREC* rstan::stan_fit::constrain_pars(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:24:89:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:40:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, Eigen::Transpose >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:20:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, Eigen::Transpose >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:20:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, Eigen::Transpose >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:20:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false>, 1, -1, false> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:155:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >, 1, -1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false> >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator, -1, -1, false> >, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false> >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:163:27:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:165:25:   required from ‘void Eigen::MatrixBase::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:255:13:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:166:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, 5>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:166:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:126:41:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:128:25:   required from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:258:13:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:29:   required from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:258:13:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 5>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:41:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:381:55:   required from ‘static Eigen::Index Eigen::internal::partial_lu_impl::unblocked_lu(Eigen::internal::partial_lu_impl::MatrixType&, PivIndex*, PivIndex&) [with Scalar = double; int StorageOrder = 0; PivIndex = int; Eigen::Index = long int; Eigen::internal::partial_lu_impl::MatrixType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:436:26:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0, 5>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:406:78:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:564:26:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 1, 1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, Eigen::Matrix, 2>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > >, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > >, Eigen::Matrix, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base > >, Eigen::Matrix, 2, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl > >, Eigen::Matrix, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product > >, Eigen::Matrix, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:594:38:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose >, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:64:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply.hpp:73:18:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:451:31:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Derived = Eigen::Block, -1, -1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:456:32:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:816:7:   required from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; OtherDerived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:296:31:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:406:48:   required from ‘Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::Product, -1, -1, false>, Eigen::TriangularView, -1, -1, false>, 1>, 0>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:110:54:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/multiply.hpp:57:15:   required from ‘Eigen::Matrix stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.hpp:431:77:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67:   required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:585:18:   required from ‘void Eigen::LDLT::_solve_impl(const RhsType&, DstType&) const [with RhsType = Eigen::Matrix; DstType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:5:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl >, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:40:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 6; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1581:64:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, Eigen::Transpose >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/tcrossprod.hpp:20:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, false> >, 1, -1, true> >, const Eigen::Block, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:76:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   required from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false> >, Eigen::Block, -1, -1, false>, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:645:16:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:452:25:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>; Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, Eigen::Block, -1, -1, false>, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/cholesky_decompose.hpp:156:48:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Matrix >, -1, 1, true, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, const Eigen::Matrix >, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, const Eigen::Matrix >, -1, 1, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1307:36:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense, const Eigen::Matrix >, 1, -1, false, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, const Eigen::Matrix >, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, const Eigen::Matrix >, 1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1309:36:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:69:8:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/InverseImpl.h:310:60:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; XprType = Eigen::Matrix; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::SrcXprType = Eigen::Inverse >; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:69:8:   required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:110:17:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:55:   required from ‘struct Eigen::internal::unary_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:69:8:   required from ‘class Eigen::internal::visitor_evaluator, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:110:17:   required from ‘void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:266:3:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix, 0>, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Matrix, 0>, Eigen::Transpose >, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Matrix, 0>, Eigen::Transpose >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Matrix, 0>, Eigen::Transpose >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:41:15:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose > >, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose > >, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose > >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose > >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:23:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:352:102:   required from ‘struct Eigen::internal::plain_object_eval, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45:   required from ‘struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:42:31:   required from ‘ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:163:19:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 16, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 16, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 16, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase >, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:38:25:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:38:25:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30:   required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:21:   required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:434:7:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:41:15:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:418:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:418:22:   required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:480:9:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:411:29:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:97:18:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:123:64:   required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:494:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:131:115:   required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12:   required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Matrix; Rhs = Eigen::Matrix; int Side = 1; int Mode = 5]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:179:21:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:511:37:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:567:3:   required from ‘void Eigen::LDLT::_solve_impl(const RhsType&, DstType&) const [with RhsType = Eigen::Matrix; DstType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:5:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:75:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type LhsPacket;
                                                                       ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:76:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type RhsPacket;
                                                                       ^~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:77:71: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
 typedef typename conditional::type ResPacket;
                                                                       ^~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::OuterStride<> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:39:18:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:60:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:73:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:124:   required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, 1, true>; Functor = Eigen::internal::add_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, 1, true>; Functor = Eigen::internal::add_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, 1, true>; Func = Eigen::internal::add_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, 1, true>; Func = Eigen::internal::add_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18:   required from ‘Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, -1, -1, false>, -1, 1, true>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:164:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Matrix >, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Matrix >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1:   required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; ResultType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1307:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, const Eigen::Matrix >, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Matrix >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1:   required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, const Eigen::Matrix >, 1, -1, false>; ResultType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1309:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; Src = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:418:22:   required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:390:11:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:274:18:   required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const Eigen::internal::false_type&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>; Func = Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, Eigen::DenseShape, Eigen::DenseShape, 5>::sub]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:329:41:   required from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42:   required from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0>; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:58:31:   required from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, 0>; ExpressionType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:406:53:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:280:48:   required from ‘void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const Eigen::internal::false_type&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; Lhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>; Func = Eigen::internal::generic_product_impl, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, 1, -1, false>, 1, -1, false>, Eigen::DenseShape, Eigen::DenseShape, 5>::sub]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:329:41:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:494:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, RhsScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:131:115:   required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 5; bool Conjugate = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12:   required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Matrix; Rhs = Eigen::Matrix; int Side = 1; int Mode = 5]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:179:21:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:511:37:   required from ‘void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Matrix; unsigned int _Mode = 5]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:567:3:   required from ‘void Eigen::LDLT::_solve_impl(const RhsType&, DstType&) const [with RhsType = Eigen::Matrix; DstType = Eigen::Matrix; _MatrixType = Eigen::Matrix; int _UpLo = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:5:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   conj_helper pcj;
                                                              ^~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28:   required from ‘Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Eigen::DenseBase::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:585:18:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs_update.hpp:38:25:   required from ‘Scalar stan::optimization::BFGSUpdate_HInv::update(const VectorT&, const VectorT&, bool) [with Scalar = double; int DimAtCompile = -1; stan::optimization::BFGSUpdate_HInv::VectorT = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/bfgs.hpp:245:18:   required from ‘int stan::optimization::BFGSMinimizer::step() [with FunctorType = stan::optimization::ModelAdaptor; QNUpdateType = stan::optimization::BFGSUpdate_HInv<>; Scalar = double; int DimAtCompile = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:121:15:   required from ‘int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:503:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:92:14:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:40:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:92:14:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:92:14:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:92:14:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:76:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 6; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1581:64:   required from ‘Eigen::internal::evaluator >::CoeffReturnType Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Product >, Eigen::Matrix, 1>; int DiagIndex = 0; Eigen::internal::evaluator >::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp:115:45:   required from ‘typename stan::return_type::type stan::math::multi_normal_lpdf(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = true; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = stan::math::var]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::CwiseNullaryOp, Eigen::Matrix >, 2>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::CwiseNullaryOp, Eigen::Matrix >, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::CwiseNullaryOp, Eigen::Matrix >, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::CwiseNullaryOp, Eigen::Matrix >, 2, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::CwiseNullaryOp, Eigen::Matrix >, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::CwiseNullaryOp, Eigen::Matrix >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/LU/PartialPivLU.h:237:28:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, -1, false>, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, -1, false>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:197:12:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, false> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, -1, 1, false> > >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, -1, 1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, -1, 1, false> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, -1, 1, false> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:197:12:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix >, -1, 1, true> >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1:   required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, const Eigen::Matrix >, -1, 1, true>; ResultType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1307:36:   required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp, const Eigen::Matrix >; MemberOp = Eigen::internal::member_sum; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:381:84:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:92:14:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:92:14:   required from ‘stan::math::multiply_mat_vari::multiply_mat_vari(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:602:9:   required from ‘typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type stan::math::multiply(const Eigen::Matrix&, const Eigen::Matrix&) [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1; typename std::enable_if<(std::is_same::value || std::is_same::value), Eigen::Matrix >::type = Eigen::Matrix]’
stan_files/mmlm_code.hpp:928:44:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:43:13:   required from ‘double stan::model::log_prob_grad(const M&, std::vector&, std::vector&, std::vector&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1169:49:   required from ‘SEXPREC* rstan::stan_fit::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularSolverVector.h:78:18:   required from ‘static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:73:12:   required from ‘static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; int Side = 1; int Mode = 6]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/SolveTriangular.h:179:21:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::sub_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:305:135:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:238:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, Eigen::Matrix, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:449:11:   required from ‘static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55:   required from ‘void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39:   required from ‘Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:14:   required from ‘Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::Matrix; _MatrixType = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/optimization/newton.hpp:21:55:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::sub_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18:   required from ‘Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, 1, true>, -1, 1, false> >; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:305:135:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:40:   [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::swap_assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = Eigen::internal::swap_assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = Eigen::internal::swap_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:418:22:   required from ‘void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, -1, 1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:1062:36:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multi_normal_log.hpp:16:56:   required from ‘typename stan::return_type::type stan::math::multi_normal_log(const T_y&, const T_loc&, const T_covar&) [with bool propto = false; T_y = Eigen::Matrix; T_loc = Eigen::Matrix; T_covar = Eigen::Matrix; typename stan::return_type::type = double]’
stan_files/mmlm_code.hpp:1125:54:   required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = false; T__ = double; std::ostream = std::basic_ostream]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/optimize/newton.hpp:61:14:   required from ‘int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mmlm_code_namespace::model_mmlm_code]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:488:41:   required from ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector&, const std::vector >&, RNG_t&) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Rcpp::List = Rcpp::Vector<19>]’
/home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1201:18:   required from ‘SEXPREC* rstan::stan_fit::call_sampler(SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:13:87:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Matrix >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Matrix >, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103:   required from ‘class Eigen::internal::BlockImpl_dense, Eigen::Matrix >, 1, -1, false, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl, Eigen::Matrix >, 1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block, Eigen::Matrix >, 1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:983:11:   [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, Eigen::Matrix >, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, false>; SrcXprType = Eigen::Block, Eigen::Matrix >, 1, -1, false>; Functor = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, false>; SrcXprType = Eigen::Block, Eigen::Matrix >, 1, -1, false>; Functor = Eigen::internal::assign_op; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, -1, false>; Src = Eigen::Block, Eigen::Matrix >, 1, -1, false>; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, -1, false>; Src = Eigen::Block, Eigen::Matrix >, 1, -1, false>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, 1, -1, false>; Src = Eigen::Block, Eigen::Matrix >, 1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Inverse >; Func = Eigen::internal::assign_op]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41:   required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19:   required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Inverse >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:379:29:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Inverse >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/inverse.hpp:18:20:   required from ‘Eigen::Matrix stan::math::inverse(const Eigen::Matrix&) [with T = double; int R = -1; int C = -1]’
stan_files/mmlm_code.hpp:433:59:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Transpose >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp:227:43:   required from ‘void stan::math::internal::mdivide_left_ldlt_vd_vari::chain() [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1>, Eigen::Product, Eigen::Transpose >, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 1>, Eigen::Product, Eigen::Transpose >, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 1>, Eigen::Product, Eigen::Transpose >, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7:   required from ‘class Eigen::SolveImpl, 1>, Eigen::Product, Eigen::Transpose >, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7:   required from ‘class Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp:227:12:   required from ‘void stan::math::internal::mdivide_left_ldlt_vd_vari::chain() [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp:227:12:   required from ‘void stan::math::internal::mdivide_left_ldlt_vd_vari::chain() [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:107:18:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:108:61:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:121:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, 6>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:56:   required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Transpose > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Transpose > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Transpose > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Transpose >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp:118:53:   required from ‘static void stan::math::internal::trace_inv_quad_form_ldlt_vari::chainB(double, stan::math::internal::trace_inv_quad_form_ldlt_impl*) [with T2 = double; int R2 = -1; int C2 = -1; T3 = stan::math::var; int R3 = -1; int C3 = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp:139:11:   required from ‘void stan::math::internal::trace_inv_quad_form_ldlt_vari::chain() [with T2 = double; int R2 = -1; int C2 = -1; T3 = stan::math::var; int R3 = -1; int C3 = 1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >, 0>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >, 0, 5>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >, 0, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Transpose > >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp:118:41:   required from ‘static void stan::math::internal::trace_inv_quad_form_ldlt_vari::chainB(double, stan::math::internal::trace_inv_quad_form_ldlt_impl*) [with T2 = double; int R2 = -1; int C2 = -1; T3 = stan::math::var; int R3 = -1; int C3 = 1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp:139:11:   required from ‘void stan::math::internal::trace_inv_quad_form_ldlt_vari::chain() [with T2 = double; int R2 = -1; int C2 = -1; T3 = stan::math::var; int R3 = -1; int C3 = 1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:48:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:29:   required from ‘double stan::mcmc::diag_e_metric::T(stan::mcmc::diag_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:42:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:132:22:   required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:60:   required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:61:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:132:22:   required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:60:   required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:52:   required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58:   required from ‘typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp:21:29:   required from ‘double stan::mcmc::diag_e_metric::T(stan::mcmc::diag_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0> >, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:23:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:132:22:   required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:60:   required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:363:13:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:107:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:107:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:108:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Product, Eigen::Transpose >, 0>, 2>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Product, Eigen::Transpose >, 0>, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Product, Eigen::Transpose >, 0>, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Product, Eigen::Transpose >, 0>, 2, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Product, Eigen::Transpose >, 0>, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Product, Eigen::Transpose >, 0>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Cholesky/LDLT.h:564:26:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp:227:10:   required from ‘void stan::math::internal::mdivide_left_ldlt_vd_vari::chain() [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, -1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:107:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:107:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, 1, -1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:108:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> > >, 1, -1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:40:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:108:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7:   required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7:   required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:72:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:108:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:197:12:   required from ‘static void Eigen::internal::gemv_dense_selector<1, StorageOrder, BlasCompatible>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; int StorageOrder = 0; bool BlasCompatible = true; typename Dest::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:383:34:   [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:23:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:132:22:   required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:60:   required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:39:   required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:107:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:269:8:   required from ‘struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, Eigen::internal::IndexBased, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8:   required from ‘struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, 1, -1, true> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:51:   required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8:   [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:108:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:22,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase > >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:363:13:   [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:251:23:   required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75:   required from ‘Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; int ProductTag = 6; LhsShape = Eigen::DenseShape; RhsShape = Eigen::DenseShape; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, LhsShape, RhsShape>::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90:   required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:132:22:   required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:24:60:   required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_mmlm_code_namespace::model_mmlm_code; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Eigen::internal::redux_impl::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:552:76:   required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:5:   required from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator >; SrcEvaluatorTypeT = Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 1> >; Functor = Eigen::internal::assign_op; int Version = 0; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:645:16:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:796:41:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:108:10:   required from ‘void stan::math::multiply_mat_vari::chain() [with Ta = stan::math::var; int Ra = 1; int Ca = -1; Tb = stan::math::var; int Cb = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned::alignment),Derived>(m);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Transpose >, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase, Eigen::Transpose >, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base, Eigen::Transpose >, 1, 8>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 1, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product, Eigen::Transpose >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:397:29:   [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32:   required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >; Derived = Eigen::Matrix]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24:   required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::Solve, 1>, Eigen::Product, Eigen::Transpose >, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp:227:10:   required from ‘void stan::math::internal::mdivide_left_ldlt_vd_vari::chain() [with int R1 = -1; int C1 = -1; int R2 = -1; int C2 = -1]’
stan_files/mmlm_code.cc:29:1:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:45:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/stan_fit.hpp:35,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
                 from stan_files/mmlm_code.hpp:18,
                 from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.9-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: ‘void stan::math::set_zero_all_adjoints()’ defined but not used [-Wunused-function]
 static void set_zero_all_adjoints() {
             ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.9-bioc/R/etc/Makeconf:174: recipe for target 'stan_files/mmlm_code.o' failed
make: *** [stan_files/mmlm_code.o] Error 1
rm stan_files/mmlm_code.cc
ERROR: compilation failed for package ‘mlm4omics’
* removing ‘/home/biocbuild/bbs-3.9-bioc/R/library/mlm4omics’