Author: Joachim Schumann
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/flowCHIC |
| Branch: RELEASE_3_9 |
| Last Commit: 0622873 |
| Last Changed Date: 2019-05-02 11:53:50 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:31:33 -0400 (Wed, 16 Oct 2019).
| Package 559/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowCHIC 1.18.0 Author: Joachim Schumann
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: flowCHIC |
| Version: 1.18.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowCHIC.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings flowCHIC_1.18.0.tar.gz |
| StartedAt: 2019-10-16 03:43:13 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:46:13 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 179.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowCHIC.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowCHIC.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings flowCHIC_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/flowCHIC.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCHIC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowCHIC' version '1.18.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowCHIC' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
extdata 5.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
fcs_to_img,character: warning in hexbin(x, y, xbin = 128): partial
argument match of 'xbin' to 'xbins'
img_sub,character: warning in hexbin(x, y, xbin = xbin): partial
argument match of 'xbin' to 'xbins'
fcs_to_img,character: no visible global function definition for 'png'
fcs_to_img,character: no visible binding for global variable 'count'
fcs_to_img,character: no visible global function definition for
'dev.off'
img_sub,character: no visible global function definition for 'png'
img_sub,character: no visible binding for global variable 'count'
img_sub,character: no visible global function definition for 'dev.off'
plot_nmds,data.frame-data.frame: no visible global function definition
for 'as.dist'
plot_nmds,data.frame-data.frame: no visible global function definition
for 'par'
plot_nmds,data.frame-data.frame: no visible global function definition
for 'plot'
plot_nmds,data.frame-data.frame: no visible global function definition
for 'hclust'
plot_nmds,data.frame-data.frame: no visible global function definition
for 'points'
plot_nmds,data.frame-data.frame: no visible global function definition
for 'text'
plot_nmds,data.frame-data.frame: no visible global function definition
for 'legend'
Undefined global functions or variables:
as.dist count dev.off hclust legend par plot png points text
Consider adding
importFrom("grDevices", "dev.off", "png")
importFrom("graphics", "legend", "par", "plot", "points", "text")
importFrom("stats", "as.dist", "hclust")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
calculate_overlaps_xor 10.68 2.65 14.30
plot_nmds 6.02 1.07 7.15
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
calculate_overlaps_xor 9.83 2.44 12.52
plot_nmds 6.65 1.13 7.84
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/flowCHIC.Rcheck/00check.log'
for details.
flowCHIC.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/flowCHIC_1.18.0.tar.gz && rm -rf flowCHIC.buildbin-libdir && mkdir flowCHIC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowCHIC.buildbin-libdir flowCHIC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL flowCHIC_1.18.0.zip && rm flowCHIC_1.18.0.tar.gz flowCHIC_1.18.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3126k 100 3126k 0 0 23.9M 0 --:--:-- --:--:-- --:--:-- 25.2M
install for i386
* installing *source* package 'flowCHIC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowCHIC'
finding HTML links ... done
Results_overlaps html
Results_overlaps_incol html
Results_overlaps_mix html
Results_xor html
Results_xor_incol html
Results_xor_mix html
abiotic_incol html
calculate_overlaps_xor html
fcs_to_img html
flowCHIC_package html
img_sub html
plot_nmds html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowCHIC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowCHIC' as flowCHIC_1.18.0.zip
* DONE (flowCHIC)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'flowCHIC' successfully unpacked and MD5 sums checked
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flowCHIC.Rcheck/examples_i386/flowCHIC-Ex.timings
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flowCHIC.Rcheck/examples_x64/flowCHIC-Ex.timings
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