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BUILD BIN report for esATAC on tokay2

This page was generated on 2019-10-16 12:40:03 -0400 (Wed, 16 Oct 2019).

Package 519/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
esATAC 1.6.1
Zheng Wei
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/esATAC
Branch: RELEASE_3_9
Last Commit: 6155826
Last Changed Date: 2019-05-15 14:36:25 -0400 (Wed, 15 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: esATAC
Version: 1.6.1
Command: rm -rf esATAC.buildbin-libdir && mkdir esATAC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=esATAC.buildbin-libdir esATAC_1.6.1.tar.gz
StartedAt: 2019-10-16 09:09:43 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 09:12:50 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 186.8 seconds
RetCode: 0
Status:  OK  
PackageFile: esATAC_1.6.1.zip
PackageFileSize: 6.855 MiB

Command output

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###
### Running command:
###
###   rm -rf esATAC.buildbin-libdir && mkdir esATAC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=esATAC.buildbin-libdir esATAC_1.6.1.tar.gz
###
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* installing *source* package 'esATAC' ...
** using staged installation
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BedLine.cpp -o BedLine.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c BedUtils.cpp -o BedUtils.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c ChrDivi.cpp -o ChrDivi.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CutCountPre.cpp -o CutCountPre.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c CutSiteCount.cpp -o CutSiteCount.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c LibComplexQC.cpp -o LibComplexQC.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c SortBed.cpp -o SortBed.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c rcpp_wrapper.cpp -o rcpp_wrapper.o
rcpp_wrapper.cpp: In function 'int CutSiteCount_wrapper(Rcpp::List)':
rcpp_wrapper.cpp:334:7: warning: variable 'tmp_k' set but not used [-Wunused-but-set-variable]
   int tmp_k;
       ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c renamer.cpp -o renamer.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c sam2bed.cc -o sam2bed.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o esATAC.dll tmp.def BedLine.o BedUtils.o ChrDivi.o CutCountPre.o CutSiteCount.o LibComplexQC.o RcppExports.o SortBed.o rcpp_wrapper.o renamer.o sam2bed.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/biocbuild/bbs-3.9-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/esATAC.buildbin-libdir/00LOCK-esATAC/00new/esATAC/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'esATAC'
    finding HTML links ... done
    ATACProc-class                          html  
    BamToBed                                html  
    BedToBigWig                             html  
    BedUtils                                html  
    Bowtie2Mapping                          html  
    finding level-2 HTML links ... done

    CutSiteCountR                           html  
    CutSitePre                              html  
    FastQC                                  html  
    FragLenDistr                            html  
    FripQC                                  html  
    LibComplexQC                            html  
    PeakCallingFseq                         html  
    PeakQC                                  html  
    RGo                                     html  
    RMotifScan                              html  
    RMotifScanPair                          html  
    RPeakAnno                               html  
    RPeakComp                               html  
    RSNPs                                   html  
    RemoveAdapter                           html  
    Renamer                                 html  
    Rsortbam                                html  
    SamToBam                                html  
    SamToBed                                html  
    TSSQC                                   html  
    UnzipAndMerge                           html  
    atacPipe2                               html  
    atacRepsPipe                            html  
    atacRepsPipe2                           html  
    configureValue                          html  
    esATAC-package                          html  
    getMotifInfo                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'esATAC' as esATAC_1.6.1.zip
* DONE (esATAC)