Package: discordant

Version: 1.8.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/discordant_1.8.0.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL discordant_1.8.0.zip && rm discordant_1.8.0.tar.gz discordant_1.8.0.zip

StartedAt: 2019-10-15 19:19:21 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:19:51 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 29.6 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/discordant_1.8.0.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL discordant_1.8.0.zip && rm discordant_1.8.0.tar.gz discordant_1.8.0.zip
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install for i386

* installing *source* package 'discordant' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/discordant.buildbin-libdir/00LOCK-discordant/00new/discordant/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'discordant'
    finding HTML links ... done
    TCGA_Breast_RNASeq                      html  
    TCGA_Breast_RNASeq_voom                 html  
    TCGA_Breast_miRNASeq                    html  
    TCGA_Breast_miRNASeq_voom               html  
    TCGA_GBM_miRNA_microarray               html  
    TCGA_GBM_transcript_microarray          html  
    createVectors                           html  
    discordantRun                           html  
    fishersTrans                            html  
    split.MADOutlier                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'discordant' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   while(flag>0 & iter<(*iteration)){
             ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/discordant.buildbin-libdir/discordant/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'discordant' as discordant_1.8.0.zip
* DONE (discordant)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'discordant' successfully unpacked and MD5 sums checked