Lang Ho Lee
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/XINA |
| Branch: RELEASE_3_9 |
| Last Commit: 78cf6c7 |
| Last Changed Date: 2019-05-02 11:54:13 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:42:18 -0400 (Wed, 16 Oct 2019).
| Package 1731/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| XINA 1.2.0 Lang Ho Lee
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: XINA |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:XINA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings XINA_1.2.0.tar.gz |
| StartedAt: 2019-10-16 07:53:38 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 07:59:02 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 324.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: XINA.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:XINA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings XINA_1.2.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/XINA.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XINA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'XINA' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'XINA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
xina_clustering 64.46 0.11 64.58
plot_condition_compositions 16.08 0.02 16.09
plot_clusters 10.68 0.02 10.75
mutate_colors 10.00 0.08 10.13
get_condition_biased_comigrations 6.40 0.01 6.42
xina_plot_all 5.00 0.75 5.75
alluvial_enriched 4.09 0.07 12.43
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
xina_clustering 45.34 0.06 45.41
plot_condition_compositions 21.88 0.03 21.92
mutate_colors 11.63 0.08 11.72
plot_clusters 10.81 0.04 10.86
get_condition_biased_comigrations 5.21 0.00 5.22
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/XINA.Rcheck/00check.log'
for details.
XINA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/XINA_1.2.0.tar.gz && rm -rf XINA.buildbin-libdir && mkdir XINA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XINA.buildbin-libdir XINA_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL XINA_1.2.0.zip && rm XINA_1.2.0.tar.gz XINA_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 642k 100 642k 0 0 8532k 0 --:--:-- --:--:-- --:--:-- 9178k
install for i386
* installing *source* package 'XINA' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'XINA'
finding HTML links ... done
add_legend html
alluvial_enriched html
alluvial_enrichment_tests html
calculate_centrality_scores html
default_size html
draw_alluvial_plot html
example_clusters html
extract_data_column html
find_similar_clusters html
generate_count_table html
generate_superset html
get_color_for_nodes html
get_colors html
get_comigrations_by_name html
get_condition_biased_comigrations html
get_layout html
get_mTOR_proteins html
get_random_data html
get_stats html
get_theme_blank html
get_unknown_ppi_nodes html
gn html
gn_desc html
hprd_ppi html
length2 html
load_previous_results html
make_random_xina_data html
mutate_colors html
organize_clusters html
plot_NA html
plot_clusters html
plot_clusters_all html
plot_condition_compositions html
plot_enrichment_results html
rank_centrality html
string_example html
xina_analysis html
xina_clustering html
xina_enrichment html
xina_plot_all html
xina_plot_bycluster html
xina_plot_single html
xina_result_example html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'XINA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XINA' as XINA_1.2.0.zip
* DONE (XINA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'XINA' successfully unpacked and MD5 sums checked
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XINA.Rcheck/examples_i386/XINA-Ex.timings
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XINA.Rcheck/examples_x64/XINA-Ex.timings
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