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INSTALL report for ProCoNA on tokay2

This page was generated on 2019-10-16 12:28:34 -0400 (Wed, 16 Oct 2019).

Package 1254/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ProCoNA 1.22.0
David L Gibbs
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ProCoNA
Branch: RELEASE_3_9
Last Commit: bf9b180
Last Changed Date: 2019-05-02 11:53:45 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: ProCoNA
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ProCoNA_1.22.0.tar.gz && rm -rf ProCoNA.buildbin-libdir && mkdir ProCoNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProCoNA.buildbin-libdir ProCoNA_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ProCoNA_1.22.0.zip && rm ProCoNA_1.22.0.tar.gz ProCoNA_1.22.0.zip
StartedAt: 2019-10-15 20:38:06 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:39:20 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 73.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ProCoNA_1.22.0.tar.gz && rm -rf ProCoNA.buildbin-libdir && mkdir ProCoNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProCoNA.buildbin-libdir ProCoNA_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ProCoNA_1.22.0.zip && rm ProCoNA_1.22.0.tar.gz ProCoNA_1.22.0.zip
###
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install for i386

* installing *source* package 'ProCoNA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'pickSoftThreshold.fromSimilarity(adj(pnet), ': unused argument (networkType = networkType) 
** help
*** installing help indices
  converting help for package 'ProCoNA'
    finding HTML links ... done
    MMvsPS                                  html  
    MMvsPSallModules                        html  
    ProCoNA_Data                            html  
    accessors                               html  
    bootstrapProconaNetwork                 html  
    buildProconaNetwork                     html  
    c2i                                     html  
    compareNetworksWithFishersExactTest     html  
    compareNetworksWithFishersExactTestProcona
                                            html  
    corBootstrap                            html  
    correlationWithPhenotypesHeatMap        html  
    getFisherMatrix                         html  
    getPeptideNAs                           html  
    goStatTest                              html  
    hclust                                  html  
    i2c                                     html  
    i2col                                   html  
    moduleMemberCorrelations                html  
    modulePhenotypeCorrelations             html  
    orderMatrixIndex                        html  
    peptideConnectivityTest                 html  
    peptideCorrelationTest                  html  
    plotNet                                 html  
    ppiPermTest                             html  
    printNet                                html  
    procona-package                         html  
    proconaNet-class                        html  
    proconaVersionFun                       html  
    runningStats                            html  
    subsetModCors                           html  
    subsetPeptideData                       html  
    toPermTest                              html  
    utri                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'ProCoNA' is deprecated and will be removed from Bioconductor
  version 3.10
** testing if installed package can be loaded from final location
Warning: Package 'ProCoNA' is deprecated and will be removed from Bioconductor
  version 3.10
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ProCoNA' ...
** testing if installed package can be loaded
Warning: Package 'ProCoNA' is deprecated and will be removed from Bioconductor
  version 3.10
* MD5 sums
packaged installation of 'ProCoNA' as ProCoNA_1.22.0.zip
* DONE (ProCoNA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ProCoNA' successfully unpacked and MD5 sums checked