Package: PepsNMR

Version: 1.1.3

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.1.3.tar.gz

StartedAt: 2019-04-09 02:48:46 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 03:01:57 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 790.3 seconds

RetCode: 0

Status:  OK

CheckDir: PepsNMR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.1.3.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/PepsNMR.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.1.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
PEPSNMR-package    307.303 46.712 356.109
PreprocessingChain 297.919 44.421 344.255
Warping             14.381  3.605  18.082
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PepsNMR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘PepsNMR’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PepsNMR)

name	user	system	elapsed
Apodization	0.600	0.085	0.705
BaselineCorrection	0.566	0.163	0.741
Bucketing	0.085	0.002	0.087
Draw	1.664	0.070	1.757
DrawPCA	0.967	0.018	0.990
DrawSignal	0.979	0.017	1.001
FirstOrderPhaseCorrection	0.047	0.009	0.056
FourierTransform	0.031	0.011	0.042
GroupDelayCorrection	0.05	0.01	0.06
InternalReferencing	0.035	0.008	0.044
NegativeValuesZeroing	0.023	0.006	0.028
Normalization	0.008	0.000	0.009
PEPSNMR-package	307.303	46.712	356.109
PreprocessingChain	297.919	44.421	344.255
ReadFids	0.283	0.064	0.347
RegionRemoval	0.008	0.000	0.008
SolventSuppression	0.122	0.047	0.170
Warping	14.381	3.605	18.082
WindowSelection	0.051	0.006	0.058
ZeroFilling	0.104	0.006	0.112
ZeroOrderPhaseCorrection	0.093	0.052	0.144
ZoneAggregation	0.297	0.078	0.376