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BUILD BIN report for PICS on celaya2

This page was generated on 2019-10-16 12:48:05 -0400 (Wed, 16 Oct 2019).

Package 1213/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PICS 2.28.0
Renan Sauteraud
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/PICS
Branch: RELEASE_3_9
Last Commit: 8cf1a4a
Last Changed Date: 2019-05-02 11:53:14 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: PICS
Version: 2.28.0
Command: rm -rf PICS.buildbin-libdir && mkdir PICS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PICS_2.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PICS.buildbin-libdir
StartedAt: 2019-10-16 09:08:21 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 09:09:06 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 45.2 seconds
RetCode: 0
Status:  OK 
PackageFile: PICS_2.28.0.tgz
PackageFileSize: 1.706 MiB

Command output

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###
### Running command:
###
###   rm -rf PICS.buildbin-libdir && mkdir PICS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PICS_2.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PICS.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PICS.buildbin-libdir PICS_2.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘PICS’ ...
** using staged installation
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c pics.c -o pics.o
pics.c:288:10: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
      if(abs(REAL(yF)[i]-mu[k]+delta[k]/2.)/sqrt(sF[k])>>>>>> 
>>>>>>> FIXING LINKS FOR PICS.buildbin-libdir/PICS/libs//PICS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"