Nolwenn Le Meur
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/PCpheno |
| Branch: RELEASE_3_9 |
| Last Commit: 5d76c77 |
| Last Changed Date: 2019-05-02 11:53:09 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:21:37 -0400 (Wed, 16 Oct 2019).
| Package 1190/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PCpheno 1.46.0 Nolwenn Le Meur
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: PCpheno |
| Version: 1.46.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PCpheno_1.46.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.46.0.zip && rm PCpheno_1.46.0.tar.gz PCpheno_1.46.0.zip |
| StartedAt: 2019-10-15 19:55:25 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:56:37 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 71.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PCpheno_1.46.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.46.0.zip && rm PCpheno_1.46.0.tar.gz PCpheno_1.46.0.zip
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install for i386
* installing *source* package 'PCpheno' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
converting help for package 'PCpheno'
finding HTML links ... done
CoHyperGParams-class html
CoHyperGResult-class html
Dudley html
Giaever html
HI html
KEGG2SCISI html
Kastenmayer html
Lesage html
Osterberg html
PCpheno.package html
SGDphenoL html
YEASTOHNOLOG html
buildFDMat html
categoryToEntrezBuilder html
complexStatus html
deResult-class html
densityEstimate html
getDescr html
getFDgene html
graphTheory html
gtResult-class html
overlap html
plot html
ppiInteraction html
reduceM html
testResult-class html
truncName html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package can be loaded from final location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PCpheno' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
* MD5 sums
packaged installation of 'PCpheno' as PCpheno_1.46.0.zip
* DONE (PCpheno)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'PCpheno' successfully unpacked and MD5 sums checked