| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:40:10 -0400 (Wed, 16 Oct 2019).
| Package 693/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GOfuncR 1.4.0 Steffi Grote
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: GOfuncR |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GOfuncR_1.4.0.tar.gz && rm -rf GOfuncR.buildbin-libdir && mkdir GOfuncR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOfuncR.buildbin-libdir GOfuncR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GOfuncR_1.4.0.zip && rm GOfuncR_1.4.0.tar.gz GOfuncR_1.4.0.zip |
| StartedAt: 2019-10-15 19:58:58 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:02:53 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 234.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GOfuncR_1.4.0.tar.gz && rm -rf GOfuncR.buildbin-libdir && mkdir GOfuncR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOfuncR.buildbin-libdir GOfuncR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GOfuncR_1.4.0.zip && rm GOfuncR_1.4.0.tar.gz GOfuncR_1.4.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3149k 100 3149k 0 0 33.3M 0 --:--:-- --:--:-- --:--:-- 36.1M
install for i386
* installing *source* package 'GOfuncR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c binom_categorytest.cc -o binom_categorytest.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c binom_randset.cc -o binom_randset.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c blocks.cpp -o blocks.o
blocks.cpp: In function 'std::set rannum_blocks(std::vector, std::vector, const std::map, int>&, std::vector)':
blocks.cpp:30:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int j=0; j < candidate_bed.size(); j++){
^
blocks.cpp:34:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int k=0; k < background.size(); k++){
^
blocks.cpp:68:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int g=0; g rannum_genelen(int, const std::map, int>&, std::vector, long int)':
ran_genelen.cpp:19:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
while (random_numbers.size() < n_candidate) {
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c read_bed.cpp -o read_bed.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c roll.cpp -o roll.o
roll.cpp: In function 'std::set rannum_roll(std::vector, std::vector, const std::map, int>&, std::vector)':
roll.cpp:30:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int j=0; j < candidate_bed.size(); j++){
^
roll.cpp:36:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i < background_bed.size(); i++){
^
roll.cpp:92:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int g=0; g rannum_blocks(std::vector, std::vector, const std::map, int>&, std::vector)':
blocks.cpp:30:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int j=0; j < candidate_bed.size(); j++){
^
blocks.cpp:34:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int k=0; k < background.size(); k++){
^
blocks.cpp:68:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int g=0; g rannum_genelen(int, const std::map, int>&, std::vector, long int)':
ran_genelen.cpp:19:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
while (random_numbers.size() < n_candidate) {
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c read_bed.cpp -o read_bed.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c roll.cpp -o roll.o
roll.cpp: In function 'std::set rannum_roll(std::vector, std::vector, const std::map, int>&, std::vector)':
roll.cpp:30:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int j=0; j < candidate_bed.size(); j++){
^
roll.cpp:36:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i < background_bed.size(); i++){
^
roll.cpp:92:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int g=0; g