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INSTALL report for Doscheda on tokay2

This page was generated on 2019-10-16 12:39:10 -0400 (Wed, 16 Oct 2019).

Package 459/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Doscheda 1.6.0
Bruno Contrino
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/Doscheda
Branch: RELEASE_3_9
Last Commit: e70d02e
Last Changed Date: 2019-05-02 11:54:08 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Doscheda
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Doscheda_1.6.0.tar.gz && rm -rf Doscheda.buildbin-libdir && mkdir Doscheda.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Doscheda.buildbin-libdir Doscheda_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Doscheda_1.6.0.zip && rm Doscheda_1.6.0.tar.gz Doscheda_1.6.0.zip
StartedAt: 2019-10-15 20:02:50 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:04:03 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 73.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Doscheda_1.6.0.tar.gz && rm -rf Doscheda.buildbin-libdir && mkdir Doscheda.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Doscheda.buildbin-libdir Doscheda_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Doscheda_1.6.0.zip && rm Doscheda_1.6.0.tar.gz Doscheda_1.6.0.zip
###
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100 2861k  100 2861k    0     0  21.1M      0 --:--:-- --:--:-- --:--:-- 22.3M

install for i386

* installing *source* package 'Doscheda' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for 'getInput' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getNorm' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getFinal' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getParameters' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getDatasets' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'boxplot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'corrPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'densityPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
Creating a new generic function for 'meanSdPlot' in package 'Doscheda'
** help
*** installing help indices
  converting help for package 'Doscheda'
    finding HTML links ... done
    ChemoProtSet-class                      html  
    boxplot-ChemoProtSet-method             html  
    corrPlot-methods                        html  
    densityPlot-methods                     html  
    doscheda                                html  
    doschedaApp                             html  
    doschedaData                            html  
    fitModel-methods                        html  
    getDatasets-methods                     html  
    getFinal-methods                        html  
    getInput-methods                        html  
    getNorm-methods                         html  
    getParameters-methods                   html  
    makeReport                              html  
    meanSdPlot-methods                      html  
    pcaPlot-methods                         html  
    plot.ChemoProtSet                       html  
    processedExample                        html  
    removePeptides-methods                  html  
    replicatePlot-methods                   html  
    runDoscheda                             html  
    runNormalisation-methods                html  
    setData-methods                         html  
    setParameters-methods                   html  
    volcanoPlot-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Doscheda' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Doscheda' as Doscheda_1.6.0.zip
* DONE (Doscheda)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Doscheda' successfully unpacked and MD5 sums checked