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BUILD report for BiocOncoTK on tokay2

This page was generated on 2019-10-16 12:41:24 -0400 (Wed, 16 Oct 2019).

Package 148/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.4.0
VJ Carey
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BiocOncoTK
Branch: RELEASE_3_9
Last Commit: 2cd2204
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocOncoTK
Version: 1.4.0
Command: chmod a+r BiocOncoTK -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
StartedAt: 2019-10-16 01:00:58 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 01:02:10 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 71.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r BiocOncoTK -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
###
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* checking for file 'BiocOncoTK/DESCRIPTION' ... OK
* preparing 'BiocOncoTK':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BiocOncoTK.Rmd' using rmarkdown
Loading required package: ontologyIndex
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "BiocOncoTK_files/figure-html/lkgbm-1.png" -trim "BiocOncoTK_files/figure-html/lkgbm-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "BiocOncoTK_files/figure-html/dopogmock-1.png" -trim "BiocOncoTK_files/figure-html/dopogmock-1.png"' execution failed with error code 4
Quitting from lines 670-673 (BiocOncoTK.Rmd) 
Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building 'BiocOncoTK.Rmd'

SUMMARY: processing the following file failed:
  'BiocOncoTK.Rmd'

Error: Vignette re-building failed.
Execution halted