Package: BayesPeak

Version: 1.36.0

Command: rm -rf BayesPeak.buildbin-libdir && mkdir BayesPeak.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesPeak.buildbin-libdir BayesPeak_1.36.0.tar.gz

StartedAt: 2019-10-16 08:44:30 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 08:45:17 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 46.4 seconds

RetCode: 0

Status:  OK

PackageFile: BayesPeak_1.36.0.zip

PackageFileSize: 1.996 MiB

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### Running command:
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###   rm -rf BayesPeak.buildbin-libdir && mkdir BayesPeak.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesPeak.buildbin-libdir BayesPeak_1.36.0.tar.gz
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install for i386

* installing *source* package 'BayesPeak' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c bayespeak.c -o bayespeak.o
bayespeak.c: In function 'bayespeak':
bayespeak.c:176:27: warning: variable 'M' set but not used [-Wunused-but-set-variable]
   double  M1, M2, M3, M4, M, a, b;
                           ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BayesPeak.dll tmp.def bayespeak.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BayesPeak.buildbin-libdir/00LOCK-BayesPeak/00new/BayesPeak/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BayesPeak'
    finding HTML links ... done
    bayespeak                               html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpSchZhG/R.INSTALL19dc772c4f2c/BayesPeak/man/bayespeak.Rd:72: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpSchZhG/R.INSTALL19dc772c4f2c/BayesPeak/man/bayespeak.Rd:76: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
    overfitting                             html  
    plot.PP                                 html  
    plot.bed                                html  
    plot.job                                html  
    raw.output.H3K4me3                      html  
    raw.output                              html  
    read.bed                                html  
    summarise.peaks                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BayesPeak' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c bayespeak.c -o bayespeak.o
bayespeak.c: In function 'bayespeak':
bayespeak.c:176:27: warning: variable 'M' set but not used [-Wunused-but-set-variable]
   double  M1, M2, M3, M4, M, a, b;
                           ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BayesPeak.dll tmp.def bayespeak.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BayesPeak.buildbin-libdir/BayesPeak/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BayesPeak' as BayesPeak_1.36.0.zip
* DONE (BayesPeak)