Estefania Mancini
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ASpli |
| Branch: master |
| Last Commit: 8c8d62f |
| Last Changed Date: 2019-01-04 13:13:06 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:33:43 -0400 (Tue, 09 Apr 2019).
| Package 85/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASpli 1.9.1 Estefania Mancini
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
| Package: ASpli |
| Version: 1.9.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.9.1.tar.gz |
| StartedAt: 2019-04-08 23:18:10 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 23:24:47 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 396.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.9.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/ASpli.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘1.9.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 16.951 0.153 17.273
plotBins 10.493 0.040 10.623
mergeBinDUAS-method 8.399 0.030 8.506
ASpli-package 7.826 0.247 8.126
AsDiscover-methods 5.961 0.124 6.118
subset-methods 5.851 0.021 5.935
junctionDUreport 5.080 0.019 5.128
containsJunctions-function 5.075 0.018 5.154
rds 5.026 0.022 5.105
filterDU-method 5.012 0.018 5.061
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ASpli ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘ASpli’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ASpli)
ASpli.Rcheck/ASpli-Ex.timings
| name | user | system | elapsed | |
| ASpli-package | 7.826 | 0.247 | 8.126 | |
| AsDiscover-methods | 5.961 | 0.124 | 6.118 | |
| DUreport | 4.618 | 0.023 | 4.676 | |
| DUreportBinSplice-method | 4.833 | 0.027 | 4.981 | |
| acc_AS | 0.024 | 0.002 | 0.027 | |
| acc_DU | 0.008 | 0.001 | 0.010 | |
| acc_counts | 0.018 | 0.002 | 0.021 | |
| acc_features | 0.264 | 0.001 | 0.265 | |
| binGenome | 2.708 | 0.012 | 2.751 | |
| containsJunctions-function | 5.075 | 0.018 | 5.154 | |
| example_data | 0.631 | 0.013 | 0.652 | |
| filterDU-method | 5.012 | 0.018 | 5.061 | |
| getConditions-function | 0.006 | 0.000 | 0.006 | |
| junctionDUreport | 5.080 | 0.019 | 5.128 | |
| loadBAM | 0.173 | 0.003 | 0.178 | |
| mergeBinDUAS-method | 8.399 | 0.030 | 8.506 | |
| plotBins | 10.493 | 0.040 | 10.623 | |
| plotGenomicRegions | 16.951 | 0.153 | 17.273 | |
| rds | 5.026 | 0.022 | 5.105 | |
| readCounts | 4.894 | 0.024 | 4.963 | |
| subset-methods | 5.851 | 0.021 | 5.935 | |