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This page was generated on 2019-04-16 11:53:55 -0400 (Tue, 16 Apr 2019).
| Package 1613/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| universalmotif 1.0.22 Benjamin Jean-Marie Tremblay
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | OK |  | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: universalmotif |
| Version: 1.0.22 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL universalmotif |
| StartedAt: 2019-04-15 18:06:25 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 18:07:39 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 74.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL universalmotif
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘universalmotif’ ...
** libs
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c add_multifreq_helper.cpp -o add_multifreq_helper.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c motif_pvalue_helper.cpp -o motif_pvalue_helper.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c motif_simil_helper.cpp -o motif_simil_helper.o
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/RcppCommon.h:187:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp.h:27,
from motif_simil_helper.cpp:1:
/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h: In function ‘Rcpp::List merge_motifs_get_offset(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::String, double, Rcpp::NumericVector, Rcpp::NumericVector, double, bool)’:
/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:442:13: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
r_vector_start<RTYPE>(x)[0] = object;
^
motif_simil_helper.cpp:732:10: note: ‘score’ was declared here
double score;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/RcppCommon.h:187:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp.h:27,
from motif_simil_helper.cpp:1:
/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:442:13: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
r_vector_start<RTYPE>(x)[0] = object;
^
motif_simil_helper.cpp:731:7: note: ‘offset’ was declared here
int offset;
^
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c scan_sequences_helper.cpp -o scan_sequences_helper.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c trim_motifs_helper.cpp -o trim_motifs_helper.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c universalmotif_helper.cpp -o universalmotif_helper.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c utils.cpp -o utils.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o universalmotif.so RcppExports.o add_multifreq_helper.o motif_pvalue_helper.o motif_simil_helper.o scan_sequences_helper.o trim_motifs_helper.o universalmotif_helper.o utils.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
if test -e "/usr/bin/strip" & test -e "/bin/uname" & [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug universalmotif.so; fi
installing to /home/biocbuild/bbs-3.8-bioc/R/library/universalmotif/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘convert_motifs’ with signature ‘motifs="MotifList"’: no definition for class “MotifList”
in method for ‘convert_motifs’ with signature ‘motifs="TFFMFirst"’: no definition for class “TFFMFirst”
in method for ‘convert_motifs’ with signature ‘motifs="PFMatrix"’: no definition for class “PFMatrix”
in method for ‘convert_motifs’ with signature ‘motifs="PWMatrix"’: no definition for class “PWMatrix”
in method for ‘convert_motifs’ with signature ‘motifs="ICMatrix"’: no definition for class “ICMatrix”
in method for ‘convert_motifs’ with signature ‘motifs="XMatrixList"’: no definition for class “XMatrixList”
in method for ‘convert_motifs’ with signature ‘motifs="pwm"’: no definition for class “pwm”
in method for ‘convert_motifs’ with signature ‘motifs="pcm"’: no definition for class “pcm”
in method for ‘convert_motifs’ with signature ‘motifs="pfm"’: no definition for class “pfm”
in method for ‘convert_motifs’ with signature ‘motifs="PWM"’: no definition for class “PWM”
in method for ‘convert_motifs’ with signature ‘motifs="Motif"’: no definition for class “Motif”
** help
Loading required namespace: universalmotif
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (universalmotif)