Anthony Chiu
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/twoddpcr |
| Branch: RELEASE_3_8 |
| Last Commit: 81366aa |
| Last Changed Date: 2018-10-30 11:42:04 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:52:37 -0400 (Tue, 16 Apr 2019).
| Package 1603/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| twoddpcr 1.6.0 Anthony Chiu
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: twoddpcr |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings twoddpcr_1.6.0.tar.gz |
| StartedAt: 2019-04-16 03:35:05 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 03:37:19 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 134.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
##############################################################################
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings twoddpcr_1.6.0.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/twoddpcr.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
knnClassify 8.688 0.024 8.719
ggplot.well 6.340 0.108 6.465
renormalisePlate 5.924 0.016 6.008
dropletPlot 5.868 0.048 5.926
flatPlot 5.800 0.088 5.902
sdRain 5.196 0.000 5.270
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 156 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
9.180 0.136 9.319
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.876 | 0.008 | 0.886 | |
| basicsSummary | 0.008 | 0.000 | 0.010 | |
| castSummary | 0.028 | 0.004 | 0.031 | |
| classCov | 0.088 | 0.004 | 0.092 | |
| classMeans | 0.100 | 0.000 | 0.098 | |
| classStats | 0.116 | 0.000 | 0.115 | |
| clusterCentres | 1.252 | 0.004 | 1.255 | |
| copiesSummary | 0.008 | 0.000 | 0.009 | |
| ddpcrPlate-class | 0.692 | 0.000 | 0.714 | |
| ddpcrWell-class | 0.072 | 0.000 | 0.072 | |
| ddpcrWell-methods | 0.712 | 0.000 | 0.711 | |
| dropletPlot | 5.868 | 0.048 | 5.926 | |
| exportTable | 0.184 | 0.020 | 0.244 | |
| extractPlateName | 0 | 0 | 0 | |
| extractWellNames | 0.000 | 0.000 | 0.001 | |
| facetPlot | 2.932 | 0.056 | 2.996 | |
| flatPlot | 5.800 | 0.088 | 5.902 | |
| fullCopiesSummary | 0.012 | 0.000 | 0.014 | |
| fullCountsSummary | 0.068 | 0.004 | 0.070 | |
| ggplot.well | 6.340 | 0.108 | 6.465 | |
| gridClassify | 3.168 | 0.016 | 3.188 | |
| heatPlot | 1.612 | 0.008 | 1.620 | |
| kmeansClassify | 1.780 | 0.000 | 1.781 | |
| knnClassify | 8.688 | 0.024 | 8.719 | |
| mahalanobisRain | 1.320 | 0.000 | 1.322 | |
| mutantCopiesSummary | 0.008 | 0.000 | 0.007 | |
| numDroplets | 0.680 | 0.000 | 0.683 | |
| parseClusterCounts | 0.016 | 0.000 | 0.018 | |
| plateClassification | 2.252 | 0.000 | 2.252 | |
| plateClassificationMethod | 0.672 | 0.000 | 0.674 | |
| plateSummary | 2.656 | 0.000 | 2.657 | |
| positiveCounts | 0.036 | 0.000 | 0.038 | |
| readCSVDataFrame | 0.020 | 0.000 | 0.017 | |
| relabelClasses | 0.108 | 0.000 | 0.107 | |
| removeDropletClasses | 1.128 | 0.004 | 1.142 | |
| renormalisePlate | 5.924 | 0.016 | 6.008 | |
| sdRain | 5.196 | 0.000 | 5.270 | |
| setChannelNames | 0.000 | 0.000 | 0.001 | |
| setDropletVolume | 0 | 0 | 0 | |
| sortDataFrame | 0.004 | 0.000 | 0.002 | |
| sortWells | 0.528 | 0.000 | 0.527 | |
| thresholdClassify | 3.244 | 0.000 | 3.259 | |
| wellClassification | 0.040 | 0.000 | 0.042 | |
| wellClassificationMethod | 0.032 | 0.000 | 0.028 | |
| whiteTheme | 1.292 | 0.008 | 1.304 | |
| wildTypeCopiesSummary | 0.008 | 0.000 | 0.005 | |