Package: martini

Version: 1.2.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL martini

StartedAt: 2019-04-15 18:06:35 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 18:06:59 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 24.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL martini
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘martini’ ...
** libs
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rgin/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:61:0,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/RcppCommon.h:29,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/RcppEigenForward.h:26,
                 from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
RcppExports.cpp: In function ‘SEXPREC* _martini_run_scones_try(SEXP, SEXP, SEXP, SEXP)’:
/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:32:9: warning: unused variable ‘nprot’ [-Wunused-variable]
     int nprot = 0;                                                                               \
         ^
RcppExports.cpp:29:1: note: in expansion of macro ‘BEGIN_RCPP’
 BEGIN_RCPP
 ^
/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:36:17: warning: unused variable ‘stop_sym’ [-Wunused-variable]
     static SEXP stop_sym = Rf_install("stop");                                                   \
                 ^
RcppExports.cpp:29:1: note: in expansion of macro ‘BEGIN_RCPP’
 BEGIN_RCPP
 ^
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rgin/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c evo.cpp -o evo.o
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rgin/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c run_scones.cpp -o run_scones.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o martini.so RcppExports.o evo.o run_scones.o /home/biocbuild/bbs-3.8-bioc/R/library/Rgin/usrlib//libgin.a /home/biocbuild/bbs-3.8-bioc/R/library/Rgin/usrlib//libmaxflow.a /home/biocbuild/bbs-3.8-bioc/R/library/Rgin/usrlib//libcephes.a -lz -pthread -fopenmp -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/martini/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (martini)