Josef Spidlen
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/flowQB |
| Branch: RELEASE_3_8 |
| Last Commit: 1f80a6c |
| Last Changed Date: 2019-01-04 13:10:07 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:49:35 -0400 (Tue, 16 Apr 2019).
| Package 544/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowQB 2.10.1 Josef Spidlen
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: flowQB |
| Version: 2.10.1 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:flowQB.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings flowQB_2.10.1.tar.gz |
| StartedAt: 2019-04-15 23:58:30 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-16 00:10:59 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 748.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowQB.Rcheck |
| Warnings: 0 |
##############################################################################
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### Running command:
###
### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:flowQB.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings flowQB_2.10.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/flowQB.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQB’ version ‘2.10.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowQB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 312.428 3.056 315.803
fit_led 11.340 0.356 11.650
qb_from_fits 10.408 0.296 10.719
calc_mean_sd_197 6.860 0.396 6.050
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
flowQB.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL flowQB ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘flowQB’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (flowQB)
flowQB.Rcheck/tests/runTests.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("flowQB")
RUNIT TEST PROTOCOL -- Tue Apr 16 00:10:56 2019
***********************************************
Number of test functions: 19
Number of errors: 0
Number of failures: 0
1 Test Suite :
flowQB RUnit Tests - 19 test functions, 0 errors, 0 failures
Number of test functions: 19
Number of errors: 0
Number of failures: 0
Warning messages:
1: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
2: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
3: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
4: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
5: Quick-TRANSfer stage steps exceeded maximum (= 3709000)
>
> proc.time()
user system elapsed
331.036 3.660 332.838
flowQB.Rcheck/flowQB-Ex.timings
| name | user | system | elapsed | |
| calc_mean_sd_197 | 6.860 | 0.396 | 6.050 | |
| calc_mean_sd_background | 2.240 | 0.096 | 1.685 | |
| calc_mean_sd_capture | 0.224 | 0.024 | 0.266 | |
| calc_mean_sd_capture_all | 3.932 | 0.180 | 3.936 | |
| calc_mean_sd_duke | 2.440 | 0.072 | 1.912 | |
| find_peak | 0.000 | 0.004 | 0.001 | |
| fit_beads | 312.428 | 3.056 | 315.803 | |
| fit_led | 11.340 | 0.356 | 11.650 | |
| fitted_ellipse_gate | 0.596 | 0.092 | 0.690 | |
| get_results_for_dyes | 1.796 | 0.076 | 1.677 | |
| peak_gate-methods | 0.440 | 0.068 | 0.507 | |
| pick_parameters-methods | 0.36 | 0.06 | 0.42 | |
| qb_from_fits | 10.408 | 0.296 | 10.719 | |
| split_in_two-methods | 0.468 | 0.032 | 0.497 | |