Package: easyRNASeq

Version: 2.18.3

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/easyRNASeq_2.18.3.tar.gz && rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyRNASeq.buildbin-libdir easyRNASeq_2.18.3.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.18.3.zip && rm easyRNASeq_2.18.3.tar.gz easyRNASeq_2.18.3.zip

StartedAt: 2019-04-12 19:45:47 -0400 (Fri, 12 Apr 2019)

EndedAt: 2019-04-12 19:47:40 -0400 (Fri, 12 Apr 2019)

EllapsedTime: 112.8 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/easyRNASeq_2.18.3.tar.gz && rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyRNASeq.buildbin-libdir easyRNASeq_2.18.3.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.18.3.zip && rm easyRNASeq_2.18.3.tar.gz easyRNASeq_2.18.3.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  121k  100  121k    0     0  3034k      0 --:--:-- --:--:-- --:--:-- 3370k

install for i386

* installing *source* package 'easyRNASeq' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for request: 'rev' when loading 'easyRNASeq'
Creating a generic function for 'basename' from package 'base' in package 'easyRNASeq'
Creating a generic function for 'file.exists' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
  converting help for package 'easyRNASeq'
    finding HTML links ... done
    DESeq-methods                           html  
    finding level-2 HTML links ... done

    GenomicRanges-methods                   html  
    IRanges-methods                         html  
    Rsamtools-methods                       html  
    ShortRead-methods                       html  
    basename-methods                        html  
    easyRNASeq-AnnotParam-accessors         html  
    easyRNASeq-AnnotParam-class             html  
    easyRNASeq-AnnotParam                   html  
    easyRNASeq-BamFileList                  html  
    easyRNASeq-BamParam-accessors           html  
    easyRNASeq-BamParam-class               html  
    easyRNASeq-BamParam                     html  
    easyRNASeq-RnaSeqParam-accessors        html  
    easyRNASeq-RnaSeqParam-class            html  
    easyRNASeq-RnaSeqParam                  html  
    easyRNASeq-accessors                    html  
    easyRNASeq-annotation-internal-methods
                                            html  
    easyRNASeq-annotation-methods           html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp0Ex0Ob/R.INSTALLdd4253630c2/easyRNASeq/man/easyRNASeq-annotation-methods.Rd:38: file link 'readGff3' in package 'genomeIntervals' does not exist and so has been treated as a topic
    easyRNASeq-class                        html  
    easyRNASeq-correction-methods           html  
    easyRNASeq-coverage-methods             html  
    easyRNASeq-datasets                     html  
    easyRNASeq-defunct-annotation-methods   html  
    easyRNASeq-defunct                      html  
    easyRNASeq-easyRNASeq                   html  
    easyRNASeq-global-variables             html  
    easyRNASeq-internal-AnnotParam-methods
                                            html  
    easyRNASeq-internal-methods             html  
    easyRNASeq-island-methods               html  
    easyRNASeq-package                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp0Ex0Ob/R.INSTALLdd4253630c2/easyRNASeq/man/easyRNASeq-package.Rd:133: file link 'BamFileList-class' in package 'Rsamtools' does not exist and so has been treated as a topic
    easyRNASeq-simpleRNASeq                 html  
    easyRNASeq-summarization-internal-methods
                                            html  
    easyRNASeq-summarization-methods        html  
    easyRNASeq-synthetic-transcripts        html  
    edgeR-methods                           html  
    file.exists-methods                     html  
    genomeIntervals-methods                 html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp0Ex0Ob/R.INSTALLdd4253630c2/easyRNASeq/man/genomeIntervals-methods.Rd:39: file link 'readGff3' in package 'genomeIntervals' does not exist and so has been treated as a topic
    parallel-methods                        html  
    print-methods                           html  
    show-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'rev' when loading 'easyRNASeq'
In R CMD INSTALL

install for x64

* installing *source* package 'easyRNASeq' ...
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'rev' when loading 'easyRNASeq'
* MD5 sums
packaged installation of 'easyRNASeq' as easyRNASeq_2.18.3.zip
* DONE (easyRNASeq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'easyRNASeq' successfully unpacked and MD5 sums checked
In R CMD INSTALL