David Jimenez-Morales
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/artMS |
| Branch: RELEASE_3_8 |
| Last Commit: cb3b4fc |
| Last Changed Date: 2019-04-07 21:39:33 -0400 (Sun, 07 Apr 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:53:54 -0400 (Tue, 16 Apr 2019).
| Package 77/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| artMS 1.0.12 David Jimenez-Morales
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: artMS |
| Version: 1.0.12 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:artMS.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings artMS_1.0.12.tar.gz |
| StartedAt: 2019-04-15 22:15:41 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 22:18:28 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 167.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: artMS.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:artMS.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings artMS_1.0.12.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/artMS.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘artMS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘artMS’ version ‘1.0.12’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘artMS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
artMS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL artMS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘artMS’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (artMS)
artMS.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(artMS)
>
> test_check("artMS")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 2 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
7.056 0.188 7.250
artMS.Rcheck/artMS-Ex.timings
| name | user | system | elapsed | |
| artmsAnalysisQuantifications | 0.008 | 0.000 | 0.008 | |
| artmsAnnotateSpecie | 0.004 | 0.000 | 0.005 | |
| artmsAnnotationUniprot | 2.436 | 0.084 | 2.533 | |
| artmsAvgIntensityRT | 2.264 | 0.004 | 2.271 | |
| artmsChangeColumnName | 0 | 0 | 0 | |
| artmsConvertMetabolomics | 0 | 0 | 0 | |
| artmsDataPlots | 0 | 0 | 0 | |
| artmsEnrichLog2fc | 0.412 | 0.012 | 3.885 | |
| artmsEnrichProfiler | 0.376 | 0.000 | 2.359 | |
| artmsEvidenceToSAINTq | 0.000 | 0.000 | 0.002 | |
| artmsEvidenceToSaintExpress | 0.000 | 0.000 | 0.001 | |
| artmsFilterEvidenceContaminants | 0.080 | 0.000 | 0.078 | |
| artmsGeneratePhSiteExtended | 0 | 0 | 0 | |
| artmsIsEvidenceNewVersion | 0.004 | 0.000 | 0.002 | |
| artmsIsSpeciesSupported | 0.096 | 0.000 | 0.098 | |
| artmsMapUniprot2Entrez | 0.236 | 0.000 | 0.234 | |
| artmsMergeEvidenceAndKeys | 0.084 | 0.004 | 0.089 | |
| artmsMsstatsSummary | 0.004 | 0.000 | 0.001 | |
| artmsPhosfateOutput | 0 | 0 | 0 | |
| artmsPhotonOutput | 0 | 0 | 0 | |
| artmsPlotHeatmapQuant | 0.256 | 0.000 | 0.257 | |
| artmsProtein2SiteConversion | 0.000 | 0.000 | 0.001 | |
| artmsQualityControlEvidenceBasic | 1.736 | 0.000 | 1.744 | |
| artmsQualityControlEvidenceExtended | 0.004 | 0.000 | 0.006 | |
| artmsQualityControlMetabolomics | 0.000 | 0.000 | 0.002 | |
| artmsQualityControlSummaryExtended | 0.004 | 0.000 | 0.002 | |
| artmsQuantification | 0 | 0 | 0 | |
| artmsReplicatePlots | 0.288 | 0.000 | 0.287 | |
| artmsResultsWide | 0.420 | 0.000 | 0.419 | |
| artmsSILACtoLong | 0 | 0 | 0 | |
| artmsSpectralCounts | 0.144 | 0.000 | 0.143 | |
| artmsVolcanoPlot | 0.392 | 0.000 | 0.394 | |
| artmsWriteConfigYamlFile | 0.004 | 0.000 | 0.000 | |