Package: anota2seq

Version: 1.4.2

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings anota2seq_1.4.2.tar.gz

StartedAt: 2019-04-15 22:12:53 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 22:17:20 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 267.5 seconds

RetCode: 0

Status:  OK

CheckDir: anota2seq.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings anota2seq_1.4.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/anota2seq.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘anota2seq/DESCRIPTION’ ... OK
* this is package ‘anota2seq’ version ‘1.4.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘anota2seq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                               user system elapsed
anota2seqGetQualityControl   42.964  0.012  43.025
anota2seqGetResidOutlierTest 42.516  0.036  42.605
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL anota2seq
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘anota2seq’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (anota2seq)

name	user	system	elapsed
anota2seq-plots	0.000	0.000	0.001
anota2seqAnalyze	1.592	0.028	1.623
anota2seqDataSetFromMatrix	0.244	0.000	0.248
anota2seqGetContrasts	0.836	0.004	0.845
anota2seqGetCovariates	0.844	0.004	0.850
anota2seqGetDeltaData	0.600	0.012	0.612
anota2seqGetNormalizedData	0.052	0.000	0.051
anota2seqGetOutput	0.624	0.004	0.629
anota2seqGetQualityControl	42.964	0.012	43.025
anota2seqGetResidOutlierTest	42.516	0.036	42.605
anota2seqGetThresholds	0.924	0.000	0.929
anota2seqPerformQC	0	0	0
anota2seqRegModes	1.648	0.012	1.660
anota2seqResidOutlierTest	0	0	0
anota2seqRun	1.476	0.008	1.487
anota2seqSelSigGenes	0.552	0.000	0.553
anota2seq_data	0.012	0.000	0.013
show-Anota2seqDataSet-method	0.22	0.00	0.22