Package: Ringo

Version: 1.46.0

Command: rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ringo.buildbin-libdir Ringo_1.46.0.tar.gz

StartedAt: 2019-04-13 07:52:21 -0400 (Sat, 13 Apr 2019)

EndedAt: 2019-04-13 07:52:57 -0400 (Sat, 13 Apr 2019)

EllapsedTime: 36.7 seconds

RetCode: 0

Status:  OK

PackageFile: Ringo_1.46.0.zip

PackageFileSize: 2.137 MiB

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### Running command:
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###   rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ringo.buildbin-libdir Ringo_1.46.0.tar.gz
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install for i386

* installing *source* package 'Ringo' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
     int * x, nval, hs, is, i;
                        ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mmedian.cpp -o mmedian.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c region_overlap.c -o region_overlap.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ringo_init.c -o ringo_init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'ls' from package 'base' in package 'Ringo'
** help
*** installing help indices
  converting help for package 'Ringo'
    finding HTML links ... done
    Ringo-internal                          html  
    arrayImage                              html  
    asExprSet                               html  
    autocorr                                html  
    cherByThreshold                         html  
    cherClass                               html  
    chipAlongChrom                          html  
    chipAlongChromOld                       html  
    computeRunningMedians                   html  
    compute_gc                              html  
    compute_sliding_t                       html  
    corrPlot                                html  
    exportCherList                          html  
    extractProbeAnno                        html  
    features2Probes                         html  
    findChersOnSmoothed                     html  
    ftr2xys                                 html  
    getFeats                                html  
    newCER                                  html  
    nimblegenNorm                           html  
    nonzero                                 html  
    plotAutocorr                            html  
    plotBM                                  html  
    plot_cher                               html  
    posToProbeAnnoEnvironment               html  
    preprocess                              html  
    probeAnnoClass                          html  
    qopS4                                   html  
    quantilesOverPositions                  html  
    readNimblegen                           html  
    regionoverlap                           html  
    relateCERs                              html  
    sigGOTable                              html  
    sliding_meansd                          html  
    sliding_quantile                        html  
    twoGaussiansNull                        html  
    upperBoundNull                          html  
    validProbeAnno                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'Ringo' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
     int * x, nval, hs, is, i;
                        ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mmedian.cpp -o mmedian.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c region_overlap.c -o region_overlap.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ringo_init.c -o ringo_init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Ringo.dll tmp.def mmeansd.o mmedian.o region_overlap.o ringo_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/Ringo.buildbin-libdir/Ringo/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Ringo' as Ringo_1.46.0.zip
* DONE (Ringo)
In R CMD INSTALL
In R CMD INSTALL