Reed Sorenson
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/RNAdecay |
| Branch: RELEASE_3_8 |
| Last Commit: 575aadd |
| Last Changed Date: 2019-01-04 13:47:05 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:53:30 -0400 (Tue, 16 Apr 2019).
| Package 1325/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RNAdecay 1.2.1 Reed Sorenson
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RNAdecay |
| Version: 1.2.1 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL RNAdecay |
| StartedAt: 2019-04-15 18:03:54 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 18:08:34 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 280.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL RNAdecay
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘RNAdecay’ ...
** libs
** arch -
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_dExp_1sse -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_1sse.cpp -o general_dExp_1sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_dExp_1sse.so general_dExp_1sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_Exp_1sse -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_1sse.cpp -o general_Exp_1sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_Exp_1sse.so general_Exp_1sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_dExp_2sse -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_2sse.cpp -o general_dExp_2sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_dExp_2sse.so general_dExp_2sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_Exp_2sse -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_2sse.cpp -o general_Exp_2sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_Exp_2sse.so general_Exp_2sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_dExp_3sse -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_3sse.cpp -o general_dExp_3sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_dExp_3sse.so general_dExp_3sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_Exp_3sse -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_3sse.cpp -o general_Exp_3sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_Exp_3sse.so general_Exp_3sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_dExp_4sse -I/usr/local/include -fpic -g -O2 -Wall -c general_dExp_4sse.cpp -o general_dExp_4sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_dExp_4sse.so general_dExp_4sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
make[1]: Entering directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.8-bioc/R/library/TMB/include -I/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include -DTMB_LIB_INIT=R_init_general_Exp_4sse -I/usr/local/include -fpic -g -O2 -Wall -c general_Exp_4sse.cpp -o general_Exp_4sse.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o general_Exp_4sse.so general_Exp_4sse.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.8-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.2.16
Current Matrix version is 1.2.17
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
installing to /home/biocbuild/bbs-3.8-bioc/R/library/RNAdecay/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RNAdecay)