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BUILD BIN report for QDNAseq on tokay1

This page was generated on 2019-04-13 11:23:39 -0400 (Sat, 13 Apr 2019).

Package 1222/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QDNAseq 1.18.0
Daoud Sie
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/QDNAseq
Branch: RELEASE_3_8
Last Commit: e78591d
Last Changed Date: 2018-10-30 11:41:53 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: QDNAseq
Version: 1.18.0
Command: rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QDNAseq.buildbin-libdir QDNAseq_1.18.0.tar.gz
StartedAt: 2019-04-13 07:48:27 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 07:48:51 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 23.7 seconds
RetCode: 0
Status:  OK  
PackageFile: QDNAseq_1.18.0.zip
PackageFileSize: 1.417 MiB

Command output

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###
### Running command:
###
###   rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QDNAseq.buildbin-libdir QDNAseq_1.18.0.tar.gz
###
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install for i386

* installing *source* package 'QDNAseq' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'QDNAseq'
    finding HTML links ... done
    LGG150                                  html  
    QDNAseq-defunct                         html  
    QDNAseq-package                         html  
    QDNAseqCopyNumbers                      html  
    QDNAseqReadCounts                       html  
    QDNAseqSignals                          html  
    addPhenodata                            html  
    applyFilters                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/applyFilters.Rd:31: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
    binReadCounts                           html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/binReadCounts.Rd:28: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
    callBins                                html  
    compareToReference                      html  
    correctBins                             html  
    createBins                              html  
    estimateCorrection                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/estimateCorrection.Rd:43: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
    exportBins                              html  
    finding level-2 HTML links ... done

    frequencyPlot                           html  
    getBinAnnotations                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/getBinAnnotations.Rd:43: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
    highlightFilters                        html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/highlightFilters.Rd:32: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
    isobarPlot                              html  
    makeCgh                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/makeCgh.Rd:37: file link 'cghRaw' in package 'CGHbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/makeCgh.Rd:38: file link 'cghSeg' in package 'CGHbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqI60OT/R.INSTALL16b48fb5b76/QDNAseq/man/makeCgh.Rd:39: file link 'cghCall' in package 'CGHbase' does not exist and so has been treated as a topic
    noisePlot                               html  
    normalizeBins                           html  
    normalizeSegmentedBins                  html  
    plot                                    html  
    poolRuns                                html  
    segmentBins                             html  
    smoothOutlierBins                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'QDNAseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QDNAseq' as QDNAseq_1.18.0.zip
* DONE (QDNAseq)
In R CMD INSTALL
In R CMD INSTALL