Guy Brock
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/MmPalateMiRNA |
| Branch: RELEASE_3_8 |
| Last Commit: c7088b6 |
| Last Changed Date: 2018-10-30 11:41:48 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:21:55 -0400 (Sat, 13 Apr 2019).
| Package 986/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MmPalateMiRNA 1.32.0 Guy Brock
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MmPalateMiRNA |
| Version: 1.32.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MmPalateMiRNA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings MmPalateMiRNA_1.32.0.tar.gz |
| StartedAt: 2019-04-13 03:56:08 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 03:58:16 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 127.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: MmPalateMiRNA.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MmPalateMiRNA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings MmPalateMiRNA_1.32.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/MmPalateMiRNA.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MmPalateMiRNA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MmPalateMiRNA' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
NOTE
Depends: includes the non-default packages:
'Biobase' 'xtable' 'limma' 'statmod' 'lattice' 'vsn'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MmPalateMiRNA' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:36: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:40: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:49: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:50: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MAplot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MAplot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:29: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:33: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:34: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:35: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:36: file link 'lattice-package' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkMVs.Rd:9: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkMVs.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkMVs.Rd:22: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkOutliers.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkOutliers.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkOutliers.Rd:23: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:32: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:33: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:34: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:40: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:44: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:51: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:60: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:61: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/filterArray.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/filterArray.Rd:12: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/filterArray.Rd:26: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/filterArray.Rd:57: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:37: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:38: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:39: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:45: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:59: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:68: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:69: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.8-bioc/meat/MmPalateMiRNA.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'limma' 'lattice' 'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'methods' 'statmod' 'vsn' 'xtable'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
clustPlot: no visible global function definition for 'par'
clustPlot: no visible global function definition for 'plot'
clustPlot: no visible global function definition for 'axis'
clustPlot: no visible global function definition for 'lines'
clustPlot: no visible global function definition for 'legend'
fixOutliers : <anonymous>: no visible global function definition for
'sd'
imputeKNN: no visible global function definition for 'sd'
imputeKNN: no visible global function definition for 'cor'
MADvsMedianPlot,list : <anonymous>: no visible global function
definition for 'RG.MA'
MADvsMedianPlot,list : <anonymous>: no visible global function
definition for 'assayData'
MADvsMedianPlot,list : <anonymous>: no visible binding for global
variable 'mad'
MADvsMedianPlot,list : <anonymous>: no visible binding for global
variable 'median'
MADvsMedianPlot,list: no visible global function definition for 'stack'
MADvsMedianPlot,list : <anonymous>: no visible global function
definition for 'pData'
MADvsMedianPlot,list : <anonymous>: no visible global function
definition for 'featureData'
MAplot,MAList: no visible global function definition for 'stack'
MAplot,NChannelSet: no visible global function definition for
'assayData'
MAplot,NChannelSet: no visible global function definition for 'stack'
checkOutliers,RGList: no visible binding for global variable 'sd'
densityplot,RGList-missing: no visible global function definition for
'as.formula'
densityplot,list-missing : <anonymous>: no visible global function
definition for 'RG.MA'
densityplot,list-missing : <anonymous>: no visible global function
definition for 'assayData'
densityplot,list-missing : <anonymous>: no visible global function
definition for 'pData'
densityplot,list-missing : <anonymous>: no visible global function
definition for 'featureData'
densityplot,list-missing: no visible global function definition for
'as.formula'
levelplot,RGList-missing: no visible global function definition for
'median'
levelplot,list-missing : <anonymous>: no visible global function
definition for 'RG.MA'
levelplot,list-missing : <anonymous>: no visible global function
definition for 'assayData'
levelplot,list-missing: no visible global function definition for
'median'
Undefined global functions or variables:
RG.MA as.formula assayData axis cor featureData legend lines mad
median pData par plot sd stack
Consider adding
importFrom("graphics", "axis", "legend", "lines", "par", "plot")
importFrom("stats", "as.formula", "cor", "mad", "median", "sd")
importFrom("utils", "stack")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/MmPalateMiRNA.Rcheck/00check.log'
for details.
MmPalateMiRNA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/MmPalateMiRNA_1.32.0.tar.gz && rm -rf MmPalateMiRNA.buildbin-libdir && mkdir MmPalateMiRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MmPalateMiRNA.buildbin-libdir MmPalateMiRNA_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL MmPalateMiRNA_1.32.0.zip && rm MmPalateMiRNA_1.32.0.tar.gz MmPalateMiRNA_1.32.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
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install for i386
* installing *source* package 'MmPalateMiRNA' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MmPalateMiRNA'
finding HTML links ... done
MADvsMedianPlot html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:36: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:40: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:49: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MADvsMedianPlot.Rd:50: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
MAplot html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MAplot.Rd:29: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MAplot.Rd:30: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
MmPalateMiRNA-package html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:29: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:33: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:34: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:35: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/MmPalateMiRNA-package.Rd:36: file link 'lattice-package' in package 'lattice' does not exist and so has been treated as a topic
PalateData html
finding level-2 HTML links ... done
checkMVs html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkMVs.Rd:9: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkMVs.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkMVs.Rd:22: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
checkOutliers html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkOutliers.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkOutliers.Rd:13: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/checkOutliers.Rd:23: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
clustPlot html
densityplot html
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Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:40: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/densityplot.Rd:51: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
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filterArray html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/filterArray.Rd:8: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
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fixMVs html
fixOutliers html
imputeKNN html
levelplot html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:37: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:45: file link 'RGList-class' in package 'limma' does not exist and so has been treated as a topic
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Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:68: file link 'MAList-class' in package 'limma' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpM7sKBz/R.INSTALL15e86cd31eaa/MmPalateMiRNA/man/levelplot.Rd:69: file link 'NChannelSet-class' in package 'Biobase' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'MmPalateMiRNA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MmPalateMiRNA' as MmPalateMiRNA_1.32.0.zip
* DONE (MmPalateMiRNA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'MmPalateMiRNA' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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MmPalateMiRNA.Rcheck/examples_i386/MmPalateMiRNA-Ex.timings
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MmPalateMiRNA.Rcheck/examples_x64/MmPalateMiRNA-Ex.timings
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