Tal Ashuach
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/MPRAnalyze |
| Branch: RELEASE_3_8 |
| Last Commit: ef30857 |
| Last Changed Date: 2019-01-04 13:40:21 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:53:49 -0400 (Tue, 16 Apr 2019).
| Package 1002/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MPRAnalyze 1.0.1 Tal Ashuach
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MPRAnalyze |
| Version: 1.0.1 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:MPRAnalyze.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings MPRAnalyze_1.0.1.tar.gz |
| StartedAt: 2019-04-16 01:35:00 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 01:37:45 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 165.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MPRAnalyze.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:MPRAnalyze.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings MPRAnalyze_1.0.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/MPRAnalyze.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MPRAnalyze/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MPRAnalyze’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MPRAnalyze’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getAlpha 8.824 0.016 8.845
analyzeComparative 7.920 0.052 7.976
testLrt 5.304 0.024 5.335
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MPRAnalyze.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL MPRAnalyze ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘MPRAnalyze’ ... ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MPRAnalyze)
MPRAnalyze.Rcheck/MPRAnalyze-Ex.timings
| name | user | system | elapsed | |
| MpraObject | 0.036 | 0.000 | 0.036 | |
| analyzeComparative | 7.920 | 0.052 | 7.976 | |
| analyzeQuantification | 3.880 | 0.084 | 3.972 | |
| estimateDepthFactors | 0.004 | 0.000 | 0.007 | |
| extractModelParameters | 1.404 | 0.008 | 1.416 | |
| getAlpha | 8.824 | 0.016 | 8.845 | |
| getDistrParam | 1.896 | 0.004 | 1.901 | |
| getFits_DNA | 2.144 | 0.000 | 2.148 | |
| getFits_RNA | 2.040 | 0.004 | 2.046 | |
| setDepthFactors | 0.008 | 0.000 | 0.008 | |
| setModel | 4.268 | 0.004 | 4.294 | |
| simulateMPRA | 0.144 | 0.016 | 0.159 | |
| testCoefficient | 4.348 | 0.004 | 4.363 | |
| testEmpirical | 3.048 | 0.004 | 3.055 | |
| testLrt | 5.304 | 0.024 | 5.335 | |