Zuguang Gu
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/HilbertCurve |
| Branch: RELEASE_3_8 |
| Last Commit: 924a7b1 |
| Last Changed Date: 2018-10-30 11:41:58 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:51:30 -0400 (Tue, 16 Apr 2019).
| Package 723/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HilbertCurve 1.12.0 Zuguang Gu
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: HilbertCurve |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings HilbertCurve_1.12.0.tar.gz |
| StartedAt: 2019-04-16 00:38:27 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 00:40:50 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 143.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HilbertCurve.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings HilbertCurve_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/HilbertCurve.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
hc_layer-HilbertCurve-method 14.960 0.212 15.229
hc_layer-GenomicHilbertCurve-method 9.944 0.108 10.099
GenomicHilbertCurve 8.868 0.076 9.731
hc_png-HilbertCurve-method 5.576 0.064 5.650
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HilbertCurve.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL HilbertCurve ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘HilbertCurve’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘HilbertCurve.Rmd’ ** testing if installed package can be loaded * DONE (HilbertCurve)
HilbertCurve.Rcheck/tests/test-all.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
>
> test_check("HilbertCurve")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
4.212 0.144 4.357
HilbertCurve.Rcheck/HilbertCurve-Ex.timings
| name | user | system | elapsed | |
| GenomicHilbertCurve-class | 0 | 0 | 0 | |
| GenomicHilbertCurve | 8.868 | 0.076 | 9.731 | |
| HilbertCurve-class | 0.000 | 0.000 | 0.001 | |
| HilbertCurve | 1.156 | 0.000 | 1.225 | |
| default_overlay | 0 | 0 | 0 | |
| hc_centered_text-HilbertCurve-method | 0.168 | 0.000 | 0.166 | |
| hc_layer-GenomicHilbertCurve-method | 9.944 | 0.108 | 10.099 | |
| hc_layer-HilbertCurve-method | 14.960 | 0.212 | 15.229 | |
| hc_layer-dispatch | 0 | 0 | 0 | |
| hc_level-HilbertCurve-method | 0.024 | 0.000 | 0.026 | |
| hc_map-GenomicHilbertCurve-method | 3.116 | 0.008 | 3.137 | |
| hc_normal_points-HilbertCurve-method | 0 | 0 | 0 | |
| hc_offset-HilbertCurve-method | 0.016 | 0.000 | 0.019 | |
| hc_png-HilbertCurve-method | 5.576 | 0.064 | 5.650 | |
| hc_points-GenomicHilbertCurve-method | 0.468 | 0.000 | 0.472 | |
| hc_points-HilbertCurve-method | 0.872 | 0.000 | 0.875 | |
| hc_points-dispatch | 0 | 0 | 0 | |
| hc_polygon-GenomicHilbertCurve-method | 0.664 | 0.004 | 0.671 | |
| hc_polygon-HilbertCurve-method | 0.132 | 0.000 | 0.135 | |
| hc_polygon-dispatch | 0 | 0 | 0 | |
| hc_rect-GenomicHilbertCurve-method | 0.460 | 0.000 | 0.462 | |
| hc_rect-HilbertCurve-method | 0.112 | 0.000 | 0.115 | |
| hc_rect-dispatch | 0.000 | 0.000 | 0.001 | |
| hc_segmented_points-HilbertCurve-method | 0.000 | 0.000 | 0.001 | |
| hc_segments-GenomicHilbertCurve-method | 0.792 | 0.000 | 0.796 | |
| hc_segments-HilbertCurve-method | 0.112 | 0.000 | 0.114 | |
| hc_segments-dispatch | 0 | 0 | 0 | |
| hc_text-GenomicHilbertCurve-method | 0.216 | 0.004 | 0.221 | |
| hc_text-HilbertCurve-method | 0.14 | 0.00 | 0.14 | |
| hc_text-dispatch | 0 | 0 | 0 | |
| show-HilbertCurve-method | 0.012 | 0.000 | 0.009 | |
| unzoom-HilbertCurve-method | 0.008 | 0.000 | 0.008 | |
| zoom-HilbertCurve-method | 0.008 | 0.000 | 0.008 | |