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BUILD BIN report for GenomicDataCommons on tokay1

This page was generated on 2019-04-13 11:27:43 -0400 (Sat, 13 Apr 2019).

Package 624/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicDataCommons 1.6.0
Sean Davis
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/GenomicDataCommons
Branch: RELEASE_3_8
Last Commit: 7bdc2aa
Last Changed Date: 2018-10-30 11:42:04 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicDataCommons
Version: 1.6.0
Command: rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.6.0.tar.gz
StartedAt: 2019-04-13 07:18:48 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 07:19:14 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 26.1 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicDataCommons_1.6.0.zip
PackageFileSize: 977.5 KiB

Command output

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###
### Running command:
###
###   rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.6.0.tar.gz
###
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install for i386

* installing *source* package 'GenomicDataCommons' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicDataCommons'
    finding HTML links ... done
    GenomicDataCommons                      html  
    aggregations                            html  
    available_expand                        html  
    available_fields                        html  
    available_values                        html  
    constants                               html  
    count                                   html  
    default_fields                          html  
    dot-htseq_importer                      html  
    entity_name                             html  
    expand                                  html  
    faceting                                html  
    filtering                               html  
    gdc_cache                               html  
    gdc_client                              html  
    gdc_clinical                            html  
    gdc_rnaseq                              html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaC97Cz/R.INSTALL4004e1877c5/GenomicDataCommons/man/gdc_rnaseq.Rd:28: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    gdc_token                               html  
    gdcdata                                 html  
    grep_fields                             html  
    id_field                                html  
    ids                                     html  
    make_filter                             html  
    manifest                                html  
    mapping                                 html  
    query                                   html  
    readDNAcopy                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaC97Cz/R.INSTALL4004e1877c5/GenomicDataCommons/man/readDNAcopy.Rd:12: file link 'read_tsv' in package 'readr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaC97Cz/R.INSTALL4004e1877c5/GenomicDataCommons/man/readDNAcopy.Rd:15: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    readHTSeqFile                           html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpaC97Cz/R.INSTALL4004e1877c5/GenomicDataCommons/man/readHTSeqFile.Rd:16: file link 'read_tsv' in package 'readr' does not exist and so has been treated as a topic
    response                                html  
    results                                 html  
    results_all                             html  
    select                                  html  
    slicing                                 html  
    status                                  html  
    transfer                                html  
    write_manifest                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenomicDataCommons' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicDataCommons' as GenomicDataCommons_1.6.0.zip
* DONE (GenomicDataCommons)
In R CMD INSTALL
In R CMD INSTALL