Dario Righelli
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/DEScan2 |
| Branch: RELEASE_3_8 |
| Last Commit: 2b9414c |
| Last Changed Date: 2019-01-04 13:29:19 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:28:58 -0400 (Sat, 13 Apr 2019).
| Package 397/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DEScan2 1.2.1 Dario Righelli
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DEScan2 |
| Version: 1.2.1 |
| Command: rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.2.1.tar.gz |
| StartedAt: 2019-04-13 07:10:08 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 07:11:20 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 72.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DEScan2_1.2.1.zip |
| PackageFileSize: 3.039 MiB |
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### Running command:
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### rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.2.1.tar.gz
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install for i386
* installing *source* package 'DEScan2' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DEScan2.buildbin-libdir/DEScan2/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DEScan2'
finding HTML links ... done
DEScan2 html
RleListToRleMatrix html
binToChrCoordMatRowNames html
binnedCovOnly html
binnedCoverage html
c_get_disjoint_max_win html
computeCoverageMovingWindowOnChr html
computeLambdaOnChr html
computeZ html
constructBedRanges html
countFinalRegions html
createGranges html
cutGRangesPerChromosome html
divideEachSampleByChromosomes html
evenRunMean html
evenRunSum html
finalRegions html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpkJyjga/R.INSTALL447c2e074a1e/DEScan2/man/finalRegions.Rd:34: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
findOverlapsOverSamples html
findPeaks html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpkJyjga/R.INSTALL447c2e074a1e/DEScan2/man/findPeaks.Rd:61: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
fromSamplesToChrsGRangesList html
generateDFofSamplesPerChromosomes html
get_disjoint_max_win html
giveUniqueNamesToPeaksOverSamples html
initMergedPeaksNames html
keepRelevantChrs html
rcpparma_get_disjoint_max_win html
readBamAsBed html
readBedFile html
readFilesAsGRangesList html
saveGRangesAsBed html
saveGRangesAsTsv html
setGRGenomeInfo html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DEScan2' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DEScan2.buildbin-libdir/DEScan2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEScan2' as DEScan2_1.2.1.zip
* DONE (DEScan2)
In R CMD INSTALL
In R CMD INSTALL