Carles Hernandez-Ferrer
| Snapshot Date: 2019-04-11 17:01:57 -0400 (Thu, 11 Apr 2019) |
| URL: https://git.bioconductor.org/packages/CTDquerier |
| Branch: RELEASE_3_8 |
| Last Commit: fd2eb0a |
| Last Changed Date: 2018-10-30 11:42:07 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-12 11:29:24 -0400 (Fri, 12 Apr 2019).
| Package 353/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CTDquerier 1.2.0 Carles Hernandez-Ferrer
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CTDquerier |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CTDquerier.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings CTDquerier_1.2.0.tar.gz |
| StartedAt: 2019-04-12 01:40:58 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 01:45:50 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 291.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CTDquerier.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CTDquerier.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings CTDquerier_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/CTDquerier.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CTDquerier/DESCRIPTION' ... OK
* this is package 'CTDquerier' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CTDquerier' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.3Mb
sub-directories of 1Mb or more:
data 3.8Mb
extdata 4.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 161 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
load_ctd_gene 8.57 0.14 8.70
query_ctd_gene 8.06 0.46 14.10
query_ctd_chem 7.25 0.33 19.83
query_ctd_dise 0.75 0.00 28.94
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
query_ctd_gene 9.42 0.26 15.55
load_ctd_gene 9.27 0.15 9.42
query_ctd_chem 6.64 0.11 18.33
query_ctd_dise 0.83 0.07 29.45
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/CTDquerier.Rcheck/00check.log'
for details.
CTDquerier.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CTDquerier_1.2.0.tar.gz && rm -rf CTDquerier.buildbin-libdir && mkdir CTDquerier.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CTDquerier.buildbin-libdir CTDquerier_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CTDquerier_1.2.0.zip && rm CTDquerier_1.2.0.tar.gz CTDquerier_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3603k 100 3603k 0 0 40.8M 0 --:--:-- --:--:-- --:--:-- 42.3M
install for i386
* installing *source* package 'CTDquerier' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CTDquerier'
finding HTML links ... done
CTDdata-class html
CTDquerier html
download_ctd_chem html
download_ctd_dise html
download_ctd_genes html
enrich-methods html
gala html
get_table-methods html
get_terms-methods html
leaf_plot html
load_ctd_chem html
load_ctd_dise html
load_ctd_gene html
query_ctd_chem html
query_ctd_dise html
query_ctd_gene html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'CTDquerier' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CTDquerier' as CTDquerier_1.2.0.zip
* DONE (CTDquerier)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'CTDquerier' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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CTDquerier.Rcheck/examples_i386/CTDquerier-Ex.timings
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CTDquerier.Rcheck/examples_x64/CTDquerier-Ex.timings
|