Back to Multiple platform build/check report for BioC 3.8
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for CAMERA on tokay1

This page was generated on 2019-04-13 11:20:55 -0400 (Sat, 13 Apr 2019).

Package 193/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CAMERA 1.38.1
Steffen Neumann
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/CAMERA
Branch: RELEASE_3_8
Last Commit: fa6deea
Last Changed Date: 2019-01-04 13:08:46 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CAMERA
Version: 1.38.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CAMERA_1.38.1.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.38.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.38.1.zip && rm CAMERA_1.38.1.tar.gz CAMERA_1.38.1.zip
StartedAt: 2019-04-12 19:57:47 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:03:20 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 332.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CAMERA_1.38.1.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.38.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.38.1.zip && rm CAMERA_1.38.1.tar.gz CAMERA_1.38.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1799k  100 1799k    0     0  44.4M      0 --:--:-- --:--:-- --:--:-- 48.8M

install for i386

* installing *source* package 'CAMERA' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/CAMERA.buildbin-libdir/CAMERA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CAMERA'
    finding HTML links ... done
    annotate-methods                        html  
    annotateDiffreport                      html  
    finding level-2 HTML links ... done

    calcCaS-methods                         html  
    calcCiS-methods                         html  
    calcIsotopes-methods                    html  
    calcPC-methods                          html  
    calcPC.hcs-methods                      html  
    calcPC.lpc-methods                      html  
    cleanParallel                           html  
    combinexsAnnos                          html  
    compoundLibraries                       html  
    compoundQuantiles-class                 html  
    compoundQuantiles                       html  
    findAdducts-methods                     html  
    findIsotopes-methods                    html  
    findIsotopesWithValidation-methods      html  
    findKendrickMasses                      html  
    findNeutralLoss                         html  
    findNeutralLossSpecs                    html  
    getAllPeakEICs-methods                  html  
    getAtomCount-compoundQuantiles-method   html  
    getIsotopeCluster                       html  
    getIsotopeProportion-compoundQuantiles-method
                                            html  
    getPeaklist-methods                     html  
    getReducedPeaklist-methods              html  
    getpspectra                             html  
    groupCorr-methods                       html  
    groupDen-methods                        html  
    groupFWHM-methods                       html  
    massWindowSizes                         html  
    mm14                                    html  
    plotEIC.xsAnnotate                      html  
    plotPsSpectrum.xsAnnotate               html  
    psDist-methods                          html  
    pspec2metfrag                           html  
    ruleSet-class                           html  
    xsAnnotate-class                        html  
    xsAnnotate                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CAMERA' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/CAMERA.buildbin-libdir/CAMERA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAMERA' as CAMERA_1.38.1.zip
* DONE (CAMERA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'CAMERA' successfully unpacked and MD5 sums checked
In R CMD INSTALL