VJ Carey
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/BiocOncoTK |
| Branch: RELEASE_3_8 |
| Last Commit: 078e833 |
| Last Changed Date: 2019-01-04 13:03:51 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:17 -0400 (Sat, 13 Apr 2019).
| Package 140/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocOncoTK 1.2.1 VJ Carey
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BiocOncoTK |
| Version: 1.2.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/BiocOncoTK_1.2.1.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.2.1.zip && rm BiocOncoTK_1.2.1.tar.gz BiocOncoTK_1.2.1.zip |
| StartedAt: 2019-04-12 20:14:48 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:15:42 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 54.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/BiocOncoTK_1.2.1.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.2.1.zip && rm BiocOncoTK_1.2.1.tar.gz BiocOncoTK_1.2.1.zip
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/microsatpan.png' to 'BiocOncoTK/microsatpan.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/pancanApp.png' to 'BiocOncoTK/pancanApp.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
restoring symbolic link as a file copy
* installing *source* package 'BiocOncoTK' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiocOncoTK'
finding HTML links ... done
CCLE_DRUG_BROAD html
TcgaMutCounts html
TcgaNIndWithAnyMut html
annotTabs html
bindMSI html
brcaMAE html
buildPancanSE html
cell_70138 html
clueDemos html
clueServiceNames html
darmGBMcls html
dingMSI html
fireMSI html
ggFeatDens html
ggFeatureSegs html
ggMutDens html
icd10_c html
loadPatel html
mc3toGR html
oncoPrintISB html
pancan.clin.varnames html
pancan_BQ html
finding level-2 HTML links ... done
pancan_app html
pancan_clinicalTabVarnames html
pancan_longname html
pancan_sampTypeMap html
pancan_tabulate html
pertClasses html
pert_70138 html
query_clue html
replaceRownames html
tumNorSet html
utils html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/microsatpan.png' to 'BiocOncoTK/microsatpan.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/pancanApp.png' to 'BiocOncoTK/pancanApp.png'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
restoring symbolic link as a file copy
* installing *source* package 'BiocOncoTK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocOncoTK' as BiocOncoTK_1.2.1.zip
* DONE (BiocOncoTK)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'BiocOncoTK' successfully unpacked and MD5 sums checked
In R CMD INSTALL